Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 3687.5 1878 100.0
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 3617.4 1880 98.1
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 3594.7 1882 97.7
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 3592.4 1882 97.7
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 3591.6 1883 97.6
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 3323.5 1887 90.5
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 3154.8 1896 85.4
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 3117.8 1902 84.4
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 3030.4 1906 82.0
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 3028.8 1906 82.4
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 3003.4 1905 81.5
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 2982.2 1905 81.0
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 2837.4 1906 77.4
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 2511.9 1924 69.4
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1713.0 1959 50.2
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1708.0 1993 50.1
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 1695.6 2010 49.8
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1691.0 2009 48.9
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1687.5 2012 48.9
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1681.8 2006 49.2
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 1679.8 2052 48.4
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1670.2 2014 48.4
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1668.3 2023 49.3
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1667.9 1991 49.4
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1665.6 2015 48.7
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1664.8 2009 48.8
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1662.1 2002 49.2
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1657.5 2028 49.0
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 1651.3 2010 48.5
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1645.2 2019 48.5
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1635.9 2000 48.2
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1633.6 2017 48.2
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1632.1 1981 48.9
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1629.0 2024 47.6
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1624.8 2015 47.8
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1623.2 2039 47.4
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1613.2 2002 48.3
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1599.7 2019 46.8
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1598.6 2031 47.6
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1594.3 2015 47.0
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1588.9 2026 46.6
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1583.5 2014 47.6
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1583.5 2035 46.7
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1565.4 2034 46.0
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1559.7 1982 47.0
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1557.0 2033 46.8
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1557.0 2000 46.5
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1553.5 2017 45.9
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1547.3 2002 46.3
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1544.6 2008 45.9
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1531.2 1987 45.6
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1525.0 2001 45.6
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1522.7 1998 45.7
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1521.5 1999 45.6
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1514.6 1993 45.6
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1512.3 2010 45.6
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1502.6 2051 44.8
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1501.9 1993 45.9
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1501.1 1992 45.3
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1496.9 2019 44.9
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1490.7 2034 45.5
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1481.1 1987 45.1
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1466.1 2004 45.2
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1454.1 2003 44.7
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1426.0 2009 44.1
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1426.0 2000 43.5
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1425.6 2018 43.7
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1415.6 2004 43.7
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1409.4 2025 42.7
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1407.1 1920 44.9
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1405.6 1922 44.7
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1404.4 2040 43.5
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1401.0 2024 43.2
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1400.2 2022 43.5
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1396.3 2024 43.2
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1392.9 1918 44.3
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1368.2 2059 42.6
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1358.2 1883 43.3
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1340.1 2010 41.4
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1337.0 2013 41.2
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1336.6 1887 42.7
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1325.8 1936 43.3
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1319.3 2137 39.8
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1293.1 1920 41.9
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1276.2 2001 41.4
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1241.1 1934 41.9
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1233.0 1719 43.7
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1219.5 1721 43.8
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1206.0 1461 48.3
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1198.3 1465 48.2
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1159.1 1964 39.9
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1149.0 2074 37.8
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1142.9 1778 41.6
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 1.7e-309 1067.0 1735 39.9
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 3.8e-298 1029.2 1973 34.5
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 6.4e-261 905.6 2094 32.9
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 1.5e-254 884.4 1647 37.6
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 2.3e-250 870.5 1168 45.3
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 1.6e-232 811.2 1446 36.6
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 7.9e-227 792.3 2151 31.3
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 3.8e-221 773.5 1655 33.2
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 1.3e-197 695.3 2062 28.7
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 8.8e-186 656.0 1941 30.5
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 1.0e-173 615.9 677 52.1
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 4.1e-159 567.4 1801 27.5
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.4e-146 525.8 1677 28.0
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 3.2e-143 514.6 1170 33.8
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 4.2e-135 487.6 439 57.9
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.4e-130 472.6 393 59.3
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 3.1e-122 444.9 348 66.4
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 7.4e-116 423.7 379 54.4
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 4.8e-107 394.4 288 68.4
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.9e-101 374.8 352 56.8
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.2e-96 359.0 441 50.3
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 1.1e-95 356.7 274 64.6
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 7.4e-84 317.4 1099 27.4
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 9.1e-74 283.9 198 68.7
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 7.7e-65 254.2 498 37.8
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 3.8e-64 251.9 269 54.6
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 1.6e-62 246.5 365 39.2
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 3.5e-49 202.2 212 53.8
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 2.3e-45 189.5 179 54.7
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 7.0e-42 177.9 361 31.3
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 6.0e-41 174.9 183 53.6
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 4.4e-36 158.7 306 36.9
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 4.1e-34 152.1 173 50.3
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 4.9e-27 128.6 213 36.6
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.1e-26 127.5 83 67.5
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-26 125.9 604 24.3
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 4.0e-21 109.0 53 100.0
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 4.0e-21 109.0 392 25.8
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 1.2e-20 107.5 67 79.1
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 1.2e-20 107.5 67 79.1
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 6.4e-19 101.7 260 28.5
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 8.4e-19 101.3 59 83.1
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 1.2e-17 97.4 71 70.4
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-17 96.3 109 45.0
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.6e-17 95.5 68 67.6
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 5.1e-16 92.0 62 71.0
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 3.3e-15 89.4 99 45.5
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 1.6e-14 87.0 126 41.3
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 4.0e-13 82.4 57 71.9
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 9.6e-07 61.2 55 52.7
Migut.B00337 Erythranthe guttata HOM05D005412 ORTHO05D006096 6.2e-06 58.5 83 43.4


User provided reference genes

Program Settings