Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p29890 Brassica napus HOM05D004939 ORTHO05D005843 9.7e-46 186.4 92 100.0
BolC8t46884H Brassica oleracea HOM05D004939 ORTHO05D005843 1.3e-37 159.5 81 95.1
BcaC08g45668 Brassica carinata HOM05D004939 ORTHO05D005843 4.7e-32 141.0 70 94.3
BolC6t38544H Brassica oleracea HOM05D004939 ORTHO05D005843 4.7e-32 141.0 70 94.3
C06p34250 Brassica napus HOM05D004939 ORTHO05D005843 8.8e-31 136.7 70 92.9
BcaC09g49204 Brassica carinata HOM05D004939 ORTHO05D005843 1.7e-29 132.5 70 90.0
BolC1t04101H Brassica oleracea HOM05D004939 ORTHO05D005843 1.7e-29 132.5 70 90.0
BraA02t08500Z Brassica rapa HOM05D004939 ORTHO05D005843 2.2e-29 132.1 67 92.5
C01p41420 Brassica napus HOM05D004939 ORTHO05D005843 6.3e-29 130.6 70 88.6
BcaB06g28697 Brassica carinata HOM05D004939 ORTHO05D005843 1.6e-27 125.9 70 84.3
BcaB02g10574 Brassica carinata HOM05D004939 ORTHO05D005843 2.7e-27 125.2 70 84.3
BcaC02g07802 Brassica carinata HOM05D004939 ORTHO05D005843 3.5e-27 124.8 70 88.6
BraA05t20140Z Brassica rapa HOM05D004939 ORTHO05D005843 5.9e-27 124.0 70 82.9
C04p15520 Brassica napus HOM05D004939 ORTHO05D005843 1.0e-26 123.2 70 81.4
BolC4t23123H Brassica oleracea HOM05D004939 ORTHO05D005843 1.0e-26 123.2 70 81.4
A05p11970 Brassica napus HOM05D004939 ORTHO05D005843 2.9e-26 121.7 70 81.4
C04p63070 Brassica napus HOM05D004939 ORTHO05D005843 3.8e-26 121.3 70 81.4
BolC4t27782H Brassica oleracea HOM05D004939 ORTHO05D005843 3.8e-26 121.3 70 81.4
Thhalv10016779m.g Eutrema salsugineum HOM05D004939 ORTHO05D005843 3.8e-26 121.3 70 80.0
Aa31LG9G13490 Aethionema arabicum HOM05D004939 ORTHO05D005843 8.5e-26 120.2 70 81.4
Sp4g15900 Schrenkiella parvula HOM05D004939 ORTHO05D005843 1.5e-25 119.4 70 77.1
BcaC02g11440 Brassica carinata HOM05D004939 ORTHO05D005843 1.9e-25 119.0 70 78.6
AL4G29230 Arabidopsis lyrata HOM05D004939 ORTHO05D005843 2.5e-25 118.6 70 78.6
AT2G33560 Arabidopsis thaliana HOM05D004939 ORTHO05D005843 4.2e-25 117.9 70 77.1
CARHR127580 Cardamine hirsuta HOM05D004939 ORTHO05D005843 9.4e-25 116.7 70 77.1
Carub.0004s1519 Capsella rubella HOM05D004939 ORTHO05D005843 1.6e-24 115.9 70 75.7
BcaB05g22459 Brassica carinata HOM05D004939 ORTHO05D005843 2.1e-24 115.5 70 78.6
C05p49160 Brassica napus HOM05D004939 ORTHO05D005843 1.0e-23 113.2 58 91.4
Ciclev10001515m.g Citrus clementina HOM05D004939 ORTHO05D005843 8.3e-21 103.6 69 65.2
THA.LOC104805020 Tarenaya hassleriana HOM05D004939 ORTHO05D005843 4.1e-20 101.3 70 64.3
Hma1.2p1_0914F.1_g236160 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 1.6e-19 99.4 69 62.3
Hma1.2p1_0914F.1_g236170 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 1.6e-19 99.4 69 62.3
Potri.005G258300 Populus trichocarpa HOM05D004939 ORTHO05D005843 1.6e-19 99.4 69 63.8
Thecc.10G149200 Theobroma cacao HOM05D004939 ORTHO05D005843 1.0e-18 96.7 69 62.3
Gohir.D05G283800 Gossypium hirsutum HOM05D004939 ORTHO05D005843 1.3e-18 96.3 69 62.3
Gohir.D05G283802 Gossypium hirsutum HOM05D004939 ORTHO05D005843 1.3e-18 96.3 69 62.3
Gorai.009G298300 Gossypium raimondii HOM05D004939 ORTHO05D005843 1.3e-18 96.3 69 62.3
Cfa014153 Carpinus fangiana HOM05D004939 ORTHO05D005843 1.7e-18 95.9 69 60.9
Duzib128G1725 Durio zibethinus HOM05D004939 ORTHO05D005843 1.7e-18 95.9 71 57.7
Manes.05G129700 Manihot esculenta HOM05D004939 ORTHO05D005843 1.7e-18 95.9 69 60.9
CiPaw.07G131300 Carya illinoinensis HOM05D004939 ORTHO05D005843 2.2e-18 95.5 69 60.9
Gohir.A05G282600 Gossypium hirsutum HOM05D004939 ORTHO05D005843 2.2e-18 95.5 69 60.9
Sabra05G0200000 Salix brachista HOM05D004939 ORTHO05D005843 2.2e-18 95.5 69 59.4
Actinidia37902 Actinidia chinensis HOM05D004939 ORTHO05D005843 2.9e-18 95.1 69 62.3
arahy.Tifrunner.gnm1.ann1.6I9FYE Arachis hypogaea HOM05D004939 ORTHO05D005843 2.9e-18 95.1 69 63.8
arahy.Tifrunner.gnm1.ann1.V9NZM2 Arachis hypogaea HOM05D004939 ORTHO05D005843 2.9e-18 95.1 69 63.8
Lalb_Chr10g0095291 Lupinus albus HOM05D004939 ORTHO05D005843 2.9e-18 95.1 70 61.4
QL02p016036 Quercus lobata HOM05D004939 ORTHO05D005843 2.9e-18 95.1 69 59.4
CSS0014437 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 3.8e-18 94.7 69 60.9
CSS0031643 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 3.8e-18 94.7 69 60.9
Potri.002G002900 Populus trichocarpa HOM05D004939 ORTHO05D005843 5.0e-18 94.4 69 59.4
Eucgr.F03614 Eucalyptus grandis HOM05D004939 ORTHO05D005843 6.5e-18 94.0 69 59.4
Lj4A813T64 Lonicera japonica HOM05D004939 ORTHO05D005843 6.5e-18 94.0 69 59.4
Prupe.5G002900 Prunus persica HOM05D004939 ORTHO05D005843 6.5e-18 94.0 69 60.9
Medtr1g035090 Medicago truncatula HOM05D004939 ORTHO05D005843 1.1e-17 93.2 69 59.4
RcHm_v2.0_Chr7g0217371 Rosa chinensis HOM05D004939 ORTHO05D005843 1.9e-17 92.4 63 68.3
TAR381G1514 Trochodendron aralioides HOM05D000924 ORTHO05D001209 1.9e-17 92.4 69 58.0
TPR.G22378 Trifolium pratense HOM05D004939 ORTHO05D005843 3.2e-17 91.7 69 58.0
GSVIVG01013446001 Vitis vinifera HOM05D004939 ORTHO05D005843 4.2e-17 91.3 69 60.9
Lj2g0017318 Lotus japonicus HOM05D004939 ORTHO05D005843 5.5e-17 90.9 69 58.0
Nitab4.5_0000464g0110 Nicotiana tabacum HOM05D004939 ORTHO05D005843 5.5e-17 90.9 69 59.4
TWI56G0687 Tripterygium wilfordii HOM05D004939 ORTHO05D005843 5.5e-17 90.9 69 58.0
ClCG11G019130 Citrullus lanatus HOM05D004939 ORTHO05D005843 7.2e-17 90.5 69 58.0
FAN08G1940 Fragaria x ananassa HOM05D004939 ORTHO05D005843 9.5e-17 90.1 79 55.7
BcaC05g28813 Brassica carinata HOM05D004939 ORTHO05D005843 1.2e-16 89.7 45 97.8
Cc10_g00160 Coffea canephora HOM05D004939 ORTHO05D005843 1.2e-16 89.7 72 58.3
FAN13G2929 Fragaria x ananassa HOM05D004939 ORTHO05D005843 1.2e-16 89.7 79 54.4
FAN18G1404 Fragaria x ananassa HOM05D004939 ORTHO05D005843 1.2e-16 89.7 79 54.4
Rhsim06G0001700 Rhododendron simsii HOM05D004939 ORTHO05D005843 1.2e-16 89.7 68 57.4
FvH4_5g26460 Fragaria vesca HOM05D004939 ORTHO05D005843 1.6e-16 89.4 63 63.5
Ca_12499_v3 Cicer arietinum L. HOM05D004939 ORTHO05D005843 2.1e-16 89.0 69 55.1
Lsat_1_v5_gn_2_3201 Lactuca sativa HOM05D004939 ORTHO05D005843 2.1e-16 89.0 69 55.1
CsaV3_4G037720 Cucumis sativus L. HOM05D004939 ORTHO05D005843 2.8e-16 88.6 69 56.5
Dinv23346 Davidia involucrata HOM05D004939 ORTHO05D005843 2.8e-16 88.6 70 54.3
Migut.N02996 Erythranthe guttata HOM05D004939 ORTHO05D005843 3.6e-16 88.2 69 59.4
FAN04G1628 Fragaria x ananassa HOM05D004939 ORTHO05D005843 3.6e-16 88.2 63 63.5
HanXRQChr14g0427951 Helianthus annuus HOM05D004939 ORTHO05D005843 3.6e-16 88.2 69 58.0
Cpa.g.sc36.110 Carica papaya HOM05D004939 ORTHO05D005843 4.7e-16 87.8 65 61.5
DCAR_023017 Daucus carota HOM05D004939 ORTHO05D005843 4.7e-16 87.8 69 52.2
Lalb_Chr17g0338141 Lupinus albus HOM05D004939 ORTHO05D005843 4.7e-16 87.8 79 53.2
ATR0605G152 Amborella trichopoda HOM05D004939 ORTHO05D005843 6.1e-16 87.4 69 55.1
Aqoxy6G03042 Aquilegia oxysepala HOM05D004939 ORTHO05D005843 6.1e-16 87.4 65 58.5
PGR031G2869 Punica granatum HOM05D004939 ORTHO05D005843 6.1e-16 87.4 69 55.1
Oeu035772.5 Olea europaea HOM05D004939 ORTHO05D005843 8.0e-16 87.0 68 60.3
MSTRG.22074 Avicennia marina HOM05D004939 ORTHO05D005843 1.0e-15 86.7 69 58.0
MELO3C017066.2 Cucumis melo HOM05D004939 ORTHO05D005843 1.0e-15 86.7 69 53.6
MBI04_g18018_MAGBIO Magnolia biondii HOM05D004939 ORTHO05D005843 1.4e-15 86.3 69 58.0
Hund05067 Selenicereus undatus HOM05D004939 ORTHO05D005843 1.8e-15 85.9 70 54.3
CANSAT11G2529 Cannabis sativa HOM05D004939 ORTHO05D005843 2.3e-15 85.5 65 56.9
EL10Ac1g01845 Beta vulgaris HOM05D004939 ORTHO05D005843 3.0e-15 85.1 70 54.3
Nn5g31070 Nelumbo nucifera HOM05D004939 ORTHO05D005843 4.0e-15 84.7 69 53.6
Sabra02G0001700 Salix brachista HOM05D004939 ORTHO05D005843 4.0e-15 84.7 83 49.4
Sc02g0009340 Simmondsia chinensis HOM05D004939 ORTHO05D005843 4.0e-15 84.7 70 55.7
Glyma.07G159700 Glycine max HOM05D004939 ORTHO05D005843 5.2e-15 84.3 69 53.6
PGSC0003DMG400010009 Solanum tuberosum HOM05D004939 ORTHO05D005843 5.2e-15 84.3 69 58.0
PSO017G2996 Papaver somniferum HOM05D004939 ORTHO05D005843 6.8e-15 84.0 64 56.2
PSO170G6093 Papaver somniferum HOM05D004939 ORTHO05D005843 6.8e-15 84.0 64 56.2
Solyc04g082900.4 Solanum lycopersicum HOM05D004939 ORTHO05D005843 6.8e-15 84.0 69 58.0
Sopen04g036540 Solanum pennellii HOM05D004939 ORTHO05D005843 6.8e-15 84.0 69 58.0
CAN.G1330.25 Capsicum annuum HOM05D004939 ORTHO05D005843 8.8e-15 83.6 69 56.5
unitig_85.g27224 Utricularia gibba HOM05D004939 ORTHO05D005843 8.8e-15 83.6 70 51.4
Sed0003879 Sechium edule HOM05D004939 ORTHO05D005843 1.2e-14 83.2 70 48.6
Glyma.20G006600 Glycine max HOM05D004939 ORTHO05D005843 1.5e-14 82.8 69 52.2
Phvul.003G009000 Phaseolus vulgaris HOM05D004939 ORTHO05D005843 2.0e-14 82.4 69 55.1
SalBow6G2808 Salvia bowleyana HOM05D004939 ORTHO05D005843 2.0e-14 82.4 69 58.0
Peaxi162Scf00385g00719 Petunia axillaris HOM05D004939 ORTHO05D005843 2.6e-14 82.0 69 56.5
VMungo1215G1457 Vigna mungo HOM05D004939 ORTHO05D005843 7.5e-14 80.5 69 52.2
ECA238G2856 Erigeron canadensis HOM05D004939 ORTHO05D005843 2.8e-13 78.6 69 52.2
Os02g0193600 Oryza sativa ssp. japonica HOM05D004939 ORTHO05D005843 3.7e-13 78.2 70 52.9
Zm00001eb236510 Zea mays HOM05D004939 ORTHO05D005843 1.1e-12 76.6 70 48.6
HPP92_020523 Vanilla planifolia HOM05D004939 ORTHO05D005843 5.4e-12 74.3 70 47.1
BcaC03g13999 Brassica carinata HOM05D004939 ORTHO05D005843 1.6e-11 72.8 38 92.1
SEGI_14150 Sequoiadendron giganteum HOM05D004939 ORTHO05D005843 1.6e-11 72.8 69 46.4
BcaB05g22524 Brassica carinata HOM05D004939 ORTHO05D005843 7.8e-11 70.5 37 91.9
SMO361G0195 Selaginella moellendorffii HOM05D004939 ORTHO05D005843 1.0e-10 70.1 81 45.7
SMO361G0676 Selaginella moellendorffii HOM05D004939 ORTHO05D005843 1.7e-10 69.3 81 45.7
Phvul.004G105714 Phaseolus vulgaris HOM05D004939 ORTHO05D005843 5.0e-10 67.8 70 47.1
Mapoly0009s0056 Marchantia polymorpha HOM05D006085 ORTHO05D007559 1.9e-09 65.9 63 47.6
CBR_g40020 Chara braunii HOM05D004939 ORTHO05D005843 3.3e-09 65.1 66 45.5
Atru.chr13.32 Acer truncatum HOM05D004939 ORTHO05D005843 4.3e-09 64.7 63 50.8
CDE05G0313 Ceratophyllum demersum HOM05D004939 ORTHO05D005843 7.3e-09 63.9 58 53.4
SGA_v2.0_scaffold227G43179 Striga asiatica HOM05D004939 ORTHO05D005843 9.5e-09 63.5 115 33.9
SMO276G0023 Selaginella moellendorffii HOM05D006085 ORTHO05D007559 1.6e-08 62.8 74 37.8
Pp3c24_5040 Physcomitrium patens HOM05D004939 ORTHO05D005843 8.0e-08 60.5 69 40.6
AUR62035188 Chenopodium quinoa HOM05D004939 ORTHO05D005843 1.0e-07 60.1 48 58.3
Nn1g04152 Nelumbo nucifera HOM05D006085 ORTHO05D007559 3.0e-07 58.5 60 48.3
ATR0217G009 Amborella trichopoda HOM05D006085 ORTHO05D007559 4.0e-07 58.2 64 45.3
AL3G53720 Arabidopsis lyrata HOM05D006085 ORTHO05D007559 6.8e-07 57.4 67 40.3
MCO16G321 Micromonas commoda HOM05D004939 ORTHO05D005843 6.8e-07 57.4 64 35.9
FvH4_7g24900 Fragaria vesca HOM05D006912 ORTHO05D008686 8.9e-07 57.0 69 34.8
FAN01G2568 Fragaria x ananassa HOM05D006912 ORTHO05D008686 8.9e-07 57.0 69 34.8
CARHR111290 Cardamine hirsuta HOM05D006085 ORTHO05D007559 1.2e-06 56.6 75 34.7
FAN03G1846 Fragaria x ananassa HOM05D006912 ORTHO05D008686 1.2e-06 56.6 75 32.0
FAN10G2815 Fragaria x ananassa HOM05D006912 ORTHO05D008686 1.2e-06 56.6 69 34.8
Psat6g131960 Pisum sativum HOM05D004939 ORTHO05D005843 1.5e-06 56.2 147 27.2
RcHm_v2.0_Chr1g0370781 Rosa chinensis HOM05D006912 ORTHO05D008686 2.0e-06 55.8 69 36.2
AT2G20635 Arabidopsis thaliana HOM05D006085 ORTHO05D007559 2.6e-06 55.5 66 37.9
TAR626G0071 Trochodendron aralioides HOM05D006085 ORTHO05D007559 2.6e-06 55.5 53 49.1
Gohir.D13G066600 Gossypium hirsutum HOM05D006085 ORTHO05D007559 3.4e-06 55.1 67 44.8
SEGI_18400 Sequoiadendron giganteum HOM05D004939 ORTHO05D005843 3.4e-06 55.1 61 41.0
Carub.0003s3516 Capsella rubella HOM05D006085 ORTHO05D007559 4.4e-06 54.7 66 37.9
Duzib052G1056 Durio zibethinus HOM05D006085 ORTHO05D007559 4.4e-06 54.7 67 43.3
Gohir.A13G055500 Gossypium hirsutum HOM05D006085 ORTHO05D007559 4.4e-06 54.7 67 44.8
Gorai.013G075800 Gossypium raimondii HOM05D006085 ORTHO05D007559 4.4e-06 54.7 67 44.8
Ciclev10014891m.g Citrus clementina HOM05D006085 ORTHO05D007559 5.7e-06 54.3 70 37.1
Prupe.2G254200 Prunus persica HOM05D006912 ORTHO05D008686 7.5e-06 53.9 66 34.8
AagrBONN_evm.TU.Sc2ySwM_228.5262 Anthoceros agrestis HOM05D004939 ORTHO05D005843 9.8e-06 53.5 63 38.1
AagrBONN_evm.TU.Sc2ySwM_228.5265 Anthoceros agrestis HOM05D004939 ORTHO05D005843 9.8e-06 53.5 63 38.1
Thhalv10001957m.g Eutrema salsugineum HOM05D006085 ORTHO05D007559 9.8e-06 53.5 67 38.8


User provided reference genes

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