Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1494.2 741 100.0
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1394.0 703 98.9
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 6.8e-299 1030.4 717 75.6
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 7.5e-298 1026.9 717 75.5
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-297 1026.2 717 74.9
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 2.8e-297 1025.0 717 74.8
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 3.6e-292 1008.1 717 74.5
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 4.7e-284 981.1 717 71.5
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 9.8e-282 973.4 717 71.8
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 3.3e-277 958.4 730 69.7
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 3.6e-276 954.9 730 68.9
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 4.4e-274 948.0 731 68.9
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 9.6e-269 930.2 720 69.2
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 7.6e-250 867.5 723 62.9
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 2.2e-225 786.2 720 57.2
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 2.2e-217 759.6 722 56.0
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 2.9e-217 759.2 722 55.0
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 8.5e-217 757.7 735 56.2
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 5.5e-216 755.0 721 55.8
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 2.1e-215 753.1 721 55.8
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 4.7e-215 751.9 721 55.9
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 1.8e-214 750.0 720 56.4
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 5.1e-214 748.4 721 54.5
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 3.3e-213 745.7 721 54.4
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 1.7e-212 743.4 724 53.7
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 1.1e-211 740.7 721 54.1
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 1.4e-211 740.3 720 54.3
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 7.0e-211 738.0 733 54.0
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 1.2e-210 737.3 720 54.2
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 2.0e-210 736.5 721 53.1
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 2.0e-210 736.5 734 55.0
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 1.0e-209 734.2 720 54.0
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.3e-209 733.8 724 54.0
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 1.3e-209 733.8 720 54.2
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 1.7e-209 733.4 722 53.9
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 2.2e-209 733.0 720 54.2
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 2.9e-209 732.6 722 54.0
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 2.5e-208 729.6 724 53.9
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 2.5e-208 729.6 732 52.5
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 1.2e-207 727.2 724 53.7
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 1.6e-207 726.9 721 52.8
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 2.7e-207 726.1 725 53.5
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 6.1e-207 724.9 719 53.8
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.0e-206 724.2 718 52.8
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 5.2e-206 721.8 738 52.7
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 3.3e-205 719.2 722 53.2
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 1.3e-204 717.2 721 53.7
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 3.7e-204 715.7 725 53.2
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 1.1e-203 714.1 499 73.7
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 3.5e-202 709.1 726 52.8
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 5.9e-202 708.4 724 52.3
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 7.2e-200 701.4 719 53.3
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 9.4e-200 701.0 726 52.2
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 9.4e-200 701.0 726 52.5
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 9.4e-200 701.0 800 49.0
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 6.1e-199 698.4 722 52.1
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 8.0e-199 698.0 758 51.8
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 4.0e-198 695.7 727 51.3
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 2.0e-197 693.3 726 51.1
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 9.8e-197 691.0 726 51.1
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 1.4e-195 687.2 737 51.7
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 1.0e-193 681.0 702 51.1
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 2.2e-193 679.9 702 50.7
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 6.5e-193 678.3 721 50.3
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 5.5e-192 675.2 722 49.3
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 2.7e-191 672.9 753 49.9
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 4.0e-190 669.1 760 47.6
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 2.6e-189 666.4 735 48.6
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 1.3e-188 664.1 721 49.8
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 1.7e-188 663.7 723 50.3
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 1.1e-187 661.0 723 50.1
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 1.6e-186 657.1 731 49.4
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 1.6e-186 657.1 723 49.5
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 2.0e-186 656.8 724 49.2
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 6.6e-185 651.7 717 50.5
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 2.5e-184 649.8 723 49.0
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 5.6e-184 648.7 805 45.6
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 7.3e-184 648.3 722 48.6
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 2.1e-183 646.7 776 47.7
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 2.3e-182 643.3 721 48.5
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.3e-180 637.5 719 49.0
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 1.8e-179 633.6 718 49.3
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 5.4e-179 632.1 728 47.7
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 4.6e-178 629.0 729 47.5
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 2.3e-177 626.7 715 48.8
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 2.3e-177 626.7 760 48.2
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 1.5e-176 624.0 725 48.4
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 3.3e-176 622.9 721 47.6
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 1.2e-173 614.4 724 46.0
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 4.1e-171 605.9 735 47.9
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 3.5e-170 602.8 513 63.4
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 1.0e-169 601.3 760 46.7
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 2.8e-167 593.2 722 46.0
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 3.5e-162 576.2 721 46.2
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 5.1e-161 572.4 695 45.6
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 2.9e-156 556.6 719 43.8
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 2.5e-152 543.5 507 54.4
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 2.2e-148 530.4 532 53.6
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 2.4e-139 500.4 474 54.2
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 9.3e-139 498.4 593 45.5
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 9.3e-139 498.4 587 46.0
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 5.8e-133 479.2 704 40.8
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 9.3e-131 471.9 693 39.4
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.1e-128 464.9 735 39.6
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.5e-117 427.9 722 38.4
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 1.3e-103 381.7 351 56.4
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 2.9e-100 370.5 449 45.9
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 4.2e-99 366.7 389 49.1
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 5.5e-99 366.3 406 49.8
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 5.5e-99 366.3 406 49.8
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.0e-97 362.1 612 37.9
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 6.7e-97 359.4 343 54.5
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 3.7e-95 353.6 340 56.5
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 2.7e-90 337.4 680 32.5
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 7.5e-88 329.3 401 48.6
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 3.4e-80 303.9 344 48.8
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.8e-78 298.1 490 36.1
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.7e-71 275.0 386 46.6
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 4.5e-69 266.9 608 31.6
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 5.8e-56 223.4 207 53.6
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 1.4e-54 218.8 818 26.8
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.9e-46 191.8 283 39.2
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 2.4e-46 191.4 245 46.9
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 9.2e-46 189.5 266 42.5
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.0e-44 184.5 147 59.2
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 6.8e-41 173.3 237 40.1
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 2.3e-36 158.3 727 24.1
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 9.6e-35 152.9 82 96.3
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 2.4e-30 138.3 791 21.9
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.9e-27 128.6 193 36.8
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.1e-26 125.2 111 61.3
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 4.5e-24 117.5 108 61.1
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 4.3e-19 100.9 164 34.8
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 3.8e-15 87.8 102 46.1
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 1.3e-10 72.8 92 42.4
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.1e-09 69.7 70 55.7
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.5e-08 65.9 84 48.8
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 2.5e-06 58.5 66 48.5


User provided reference genes

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