Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 9.5e-159 563.5 301 100.0
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 4.5e-140 501.5 301 91.4
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 2.6e-132 475.7 301 87.4
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 2.6e-132 475.7 301 87.4
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 2.8e-126 455.7 301 85.7
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 6.1e-89 331.6 304 65.1
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 2.8e-86 322.8 326 60.7
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 1.7e-83 313.5 304 61.5
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.1e-81 306.6 333 59.2
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 3.0e-80 302.8 311 59.5
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.4e-77 293.9 299 58.9
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 1.8e-77 293.5 303 58.4
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 5.4e-61 238.8 304 51.3
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.2e-57 227.6 304 50.7
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 1.1e-53 214.5 231 60.6
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 5.4e-53 212.2 320 45.3
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 1.1e-48 198.0 157 70.7
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 4.0e-48 196.1 325 40.6
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.2e-48 195.7 325 40.6
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.8e-47 192.2 325 39.1
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 5.4e-45 185.7 325 39.4
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 7.8e-44 181.8 322 39.1
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 3.0e-43 179.9 322 39.4
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 3.0e-43 179.9 318 39.9
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 3.0e-43 179.9 353 38.8
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 6.6e-43 178.7 334 40.4
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 8.6e-43 178.3 346 37.9
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 3.3e-42 176.4 304 39.1
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 3.3e-42 176.4 329 38.6
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 4.3e-42 176.0 329 39.5
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 5.6e-42 175.6 204 56.4
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 7.3e-42 175.3 334 37.7
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 7.3e-42 175.3 280 41.4
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 3.6e-41 172.9 119 75.6
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 1.4e-40 171.0 261 41.0
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.4e-40 171.0 327 37.0
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 2.4e-40 170.2 330 37.6
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 6.8e-40 168.7 317 36.0
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 1.5e-39 167.5 316 38.3
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 3.4e-39 166.4 331 37.2
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 3.4e-39 166.4 330 36.7
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 1.3e-38 164.5 325 37.2
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 2.9e-38 163.3 315 39.7
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 4.9e-38 162.5 313 36.7
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.9e-38 162.5 296 39.5
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 3.2e-37 159.8 318 36.8
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 4.2e-37 159.5 325 37.5
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 5.4e-37 159.1 331 37.2
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 5.4e-37 159.1 315 35.9
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 7.1e-37 158.7 320 38.8
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 7.1e-37 158.7 335 36.7
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 9.2e-37 158.3 313 38.3
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 9.2e-37 158.3 336 35.1
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 1.6e-36 157.5 318 36.5
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 2.1e-36 157.1 337 36.8
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 2.7e-36 156.8 327 36.4
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 6.0e-36 155.6 327 37.0
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 6.0e-36 155.6 315 35.6
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 1.3e-35 154.5 318 37.4
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.3e-35 154.5 310 33.9
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 1.3e-35 154.5 322 35.1
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 3.0e-35 153.3 330 35.2
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.9e-35 152.9 336 35.1
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 3.9e-35 152.9 324 36.1
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 6.6e-35 152.1 348 35.3
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 1.5e-34 151.0 322 37.0
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 1.9e-34 150.6 335 36.1
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 2.5e-34 150.2 337 34.1
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.5e-34 150.2 337 34.1
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 2.5e-34 150.2 350 34.0
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 1.2e-33 147.9 320 35.6
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.2e-33 147.9 337 34.1
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 1.2e-33 147.9 314 34.7
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.6e-33 147.5 325 36.0
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 2.8e-33 146.7 265 37.4
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.1e-32 144.8 237 46.8
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 1.1e-32 144.8 304 34.5
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.8e-32 144.1 338 36.4
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 3.1e-32 143.3 329 33.7
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 5.3e-32 142.5 307 35.5
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 6.9e-32 142.1 303 34.3
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 2.0e-31 140.6 353 32.3
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 4.4e-31 139.4 330 35.5
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 5.8e-31 139.0 324 34.6
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 5.8e-31 139.0 314 33.8
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 9.9e-31 138.3 323 32.8
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 2.2e-30 137.1 313 33.9
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 3.8e-30 136.3 310 34.8
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 6.4e-30 135.6 337 33.2
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.9e-29 134.0 323 34.4
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 5.4e-29 132.5 313 32.3
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 7.1e-29 132.1 333 33.3
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.2e-28 131.3 276 34.8
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 1.6e-28 131.0 317 34.4
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.1e-28 130.6 321 34.9
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 2.1e-28 130.6 319 34.5
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 3.5e-28 129.8 371 31.3
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.3e-27 127.9 314 32.8
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 3.0e-27 126.7 311 34.4
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 5.1e-27 125.9 328 31.7
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 5.1e-27 125.9 302 35.1
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 6.6e-27 125.6 269 34.2
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 8.7e-27 125.2 301 33.6
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 3.3e-26 123.2 289 34.3
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 9.6e-26 121.7 394 29.9
BcaC03g16136 Brassica carinata HOM05D015278 ORTHO05D032781 3.6e-25 119.8 247 41.7
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 8.1e-25 118.6 354 30.8
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.1e-24 116.7 218 40.8
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.3e-24 115.9 225 38.2
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 9.0e-24 115.2 378 30.4
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 2.0e-23 114.0 207 43.0
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 1.3e-22 111.3 119 58.0
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.3e-22 111.3 306 33.3
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 1.7e-22 110.9 305 34.1
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 4.9e-22 109.4 328 31.1
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 1.4e-21 107.8 119 57.1
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 2.4e-21 107.1 302 32.5
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 7.1e-21 105.5 301 30.6
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 3.5e-20 103.2 319 31.0
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 4.6e-20 102.8 365 29.6
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 7.9e-20 102.1 107 52.3
BcaC03g18319 Brassica carinata HOM05D001447 ORTHO05D005923 1.0e-19 101.7 107 57.0
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 3.3e-18 96.7 133 43.6
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 9.6e-18 95.1 228 34.2
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 1.3e-17 94.7 348 28.7
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.1e-17 94.0 170 44.1
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 3.7e-17 93.2 165 40.0
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 1.8e-16 90.9 105 49.5
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 2.4e-16 90.5 117 47.0
BcaC04g19960 Brassica carinata HOM05D001447 ORTHO05D005923 2.6e-15 87.0 101 53.5
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 2.6e-15 87.0 147 36.7
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 7.6e-15 85.5 418 25.4
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 5.5e-13 79.3 219 32.0
AL6G53120 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 7.1e-13 79.0 59 74.6
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 7.1e-13 79.0 236 29.2
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 6.7e-11 72.4 244 30.3
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 6.7e-11 72.4 55 67.3
C02p39380 Brassica napus HOM05D015278 ORTHO05D032781 8.7e-11 72.0 64 71.9
BolC2t09948H Brassica oleracea HOM05D015278 ORTHO05D032781 8.7e-11 72.0 64 71.9
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 8.7e-11 72.0 367 24.8
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-10 71.2 171 35.7
C09p74960 Brassica napus HOM05D015278 ORTHO05D005923 1.9e-10 70.9 59 72.9
C01p41070 Brassica napus HOM05D015278 ORTHO05D005923 9.6e-10 68.6 59 71.2
C04p53240 Brassica napus HOM05D015278 ORTHO05D005923 1.3e-09 68.2 59 71.2
C04p53330 Brassica napus HOM05D015278 ORTHO05D005923 1.3e-09 68.2 59 71.2
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 3.7e-09 66.6 128 32.8
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 4.8e-09 66.2 294 23.8
C07p45330 Brassica napus HOM05D015278 ORTHO05D005923 8.2e-09 65.5 59 69.5
C02p22810 Brassica napus HOM05D015278 ORTHO05D005923 1.1e-08 65.1 59 69.5
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 2.6e-07 60.5 315 27.6
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.3e-06 58.2 206 26.2
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 6.5e-06 55.8 92 38.0


User provided reference genes

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