Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p28590 Brassica napus HOM05D010457 ORTHO05D002434 7.6e-56 220.3 115 100.0
BraA05t21736Z Brassica rapa HOM05D010457 ORTHO05D002434 7.3e-51 203.8 115 87.0
BcaC05g28318 Brassica carinata HOM05D010457 ORTHO05D002434 2.4e-46 188.7 116 85.3
C05p44000 Brassica napus HOM05D010457 ORTHO05D002434 2.4e-46 188.7 116 85.3
BolC5t33118H Brassica oleracea HOM05D010457 ORTHO05D002434 2.4e-46 188.7 116 85.3
BcaB06g26099 Brassica carinata HOM05D010457 ORTHO05D002434 1.3e-39 166.4 119 75.6
BcaC01g03566 Brassica carinata HOM05D010457 ORTHO05D002434 6.9e-33 144.1 115 73.9
BolC3t17394H Brassica oleracea HOM05D010457 ORTHO05D002434 6.9e-33 144.1 115 73.9
C03p51080 Brassica napus HOM05D010457 ORTHO05D002434 2.9e-31 138.7 115 71.3
CARHR095990 Cardamine hirsuta HOM05D003074 ORTHO05D002434 4.2e-30 134.8 120 57.5
C01p43750 Brassica napus HOM05D010457 ORTHO05D002434 1.0e-28 130.2 116 70.7
BolC1t04334H Brassica oleracea HOM05D010457 ORTHO05D002434 1.0e-28 130.2 116 70.7
Thhalv10021814m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 6.7e-28 127.5 113 62.8
BcaC09g48988 Brassica carinata HOM05D010457 ORTHO05D002434 1.1e-27 126.7 116 69.0
Sp3g18370 Schrenkiella parvula HOM05D010457 ORTHO05D002434 5.7e-27 124.4 120 64.2
BraA01t03531Z Brassica rapa HOM05D010457 ORTHO05D002434 2.1e-26 122.5 114 64.9
BcaB04g20658 Brassica carinata HOM05D010457 ORTHO05D002434 6.3e-26 120.9 119 66.4
A01p34340 Brassica napus HOM05D010457 ORTHO05D002434 6.9e-25 117.5 116 63.8
Carub.0003s2029 Capsella rubella HOM05D010457 ORTHO05D002434 9.0e-25 117.1 119 56.3
Aa31LG8G7150 Aethionema arabicum HOM05D010457 ORTHO05D002434 1.5e-16 89.7 117 44.4
AL3G34060 Arabidopsis lyrata HOM05D010457 ORTHO05D002434 2.7e-13 79.0 120 38.3
BcaC05g28320 Brassica carinata HOM05D010457 ORTHO05D002434 3.6e-13 78.6 56 66.1
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 6.1e-13 77.8 129 35.7
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 7.9e-13 77.4 125 40.0
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 1.4e-12 76.6 121 38.0
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.4e-12 76.6 122 36.9
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.9e-12 75.1 122 39.3
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 3.9e-12 75.1 122 39.3
AT3G20340 Arabidopsis thaliana HOM05D010457 ORTHO05D002434 8.8e-12 73.9 116 36.2
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 8.8e-12 73.9 124 39.5
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 1.5e-11 73.2 131 35.9
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 1.5e-11 73.2 116 34.5
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 2.5e-11 72.4 119 36.1
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 2.5e-11 72.4 117 35.9
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 5.7e-11 71.2 124 33.1
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 5.7e-11 71.2 114 34.2
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 5.7e-11 71.2 127 33.1
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 7.4e-11 70.9 127 33.1
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 2.2e-10 69.3 120 33.3
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 3.7e-10 68.6 118 35.6
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 3.7e-10 68.6 122 33.6
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 6.3e-10 67.8 120 34.2
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 6.3e-10 67.8 131 34.4
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.1e-09 67.0 132 34.1
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 1.4e-09 66.6 120 34.2
CDE05G3459 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 1.4e-09 66.6 120 35.0
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 1.4e-09 66.6 118 33.9
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.8e-09 66.2 115 35.7
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 2.4e-09 65.9 121 33.9
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 3.1e-09 65.5 118 32.2
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 4.1e-09 65.1 119 43.7
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 4.1e-09 65.1 115 35.7
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 5.3e-09 64.7 124 31.5
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 6.9e-09 64.3 117 36.8
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 6.9e-09 64.3 117 36.8
Sc03g0008600 Simmondsia chinensis HOM05D003074 ORTHO05D002434 6.9e-09 64.3 122 32.0
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 1.2e-08 63.5 115 32.2
AUR62020442 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.2e-08 63.5 132 31.8
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.2e-08 63.5 125 31.2
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 1.5e-08 63.2 124 31.5
Sc16g0006080 Simmondsia chinensis HOM05D003074 ORTHO05D002434 1.5e-08 63.2 122 32.0
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.0e-08 62.8 133 30.1
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.6e-08 62.4 122 31.1
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 2.6e-08 62.4 121 33.9
Aqoxy1G02175 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 3.4e-08 62.0 118 34.7
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 4.5e-08 61.6 114 32.5
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 5.9e-08 61.2 140 27.1
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 5.9e-08 61.2 140 27.1
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 5.9e-08 61.2 140 27.1
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 7.7e-08 60.8 136 29.4
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 7.7e-08 60.8 124 32.3
AUR62015772 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.0e-07 60.5 123 32.5
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 1.0e-07 60.5 140 27.1
Phvul.003G077900 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 1.0e-07 60.5 125 35.2
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 1.3e-07 60.1 124 31.5
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 2.2e-07 59.3 117 31.6
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 2.2e-07 59.3 139 31.7
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 2.2e-07 59.3 116 31.9
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 2.2e-07 59.3 120 34.2
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 2.9e-07 58.9 126 32.5
Ca_00651_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 2.9e-07 58.9 133 30.1
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.9e-07 58.9 122 30.3
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 2.9e-07 58.9 117 35.9
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 3.8e-07 58.5 114 33.3
AUR62020443 Chenopodium quinoa HOM05D003074 ORTHO05D002434 3.8e-07 58.5 118 35.6
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 3.8e-07 58.5 117 30.8
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 3.8e-07 58.5 119 32.8
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 3.8e-07 58.5 124 30.6
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 5.0e-07 58.2 117 33.3
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 5.0e-07 58.2 115 30.4
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 6.5e-07 57.8 141 26.2
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 6.5e-07 57.8 111 31.5
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 8.5e-07 57.4 127 32.3
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 8.5e-07 57.4 124 34.7
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 8.5e-07 57.4 117 32.5
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 8.5e-07 57.4 117 32.5
Lj6g0026915 Lotus japonicus HOM05D008677 ORTHO05D002434 1.1e-06 57.0 131 30.5
Lalb_Chr15g0087561 Lupinus albus HOM05D008677 ORTHO05D002434 1.1e-06 57.0 121 29.8
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.4e-06 56.6 126 31.0
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.9e-06 56.2 115 31.3
Gohir.A10G013000 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.9e-06 56.2 120 31.7
Oeu063916.1 Olea europaea HOM05D003074 ORTHO05D002434 1.9e-06 56.2 124 33.1
CANSAT56G1803 Cannabis sativa HOM05D003074 ORTHO05D002434 2.5e-06 55.8 145 29.0
Lj4g0005888 Lotus japonicus HOM05D008677 ORTHO05D002434 2.5e-06 55.8 131 26.0
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 2.5e-06 55.8 123 32.5
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 2.5e-06 55.8 117 33.3
Phvul.006G150100 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 2.5e-06 55.8 125 28.8
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 3.2e-06 55.5 132 28.0
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 3.2e-06 55.5 136 26.5
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 3.2e-06 55.5 132 28.8
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 3.2e-06 55.5 123 35.8
Gohir.D10G012900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.2e-06 55.5 120 30.8
Gorai.011G014600 Gossypium raimondii HOM05D003074 ORTHO05D002434 3.2e-06 55.5 120 30.8
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 3.2e-06 55.5 128 30.5
Aqoxy1G02177 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 4.2e-06 55.1 123 33.3
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 4.2e-06 55.1 120 31.7
TPR.G9935 Trifolium pratense HOM05D008677 ORTHO05D002434 4.2e-06 55.1 131 29.8
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 5.5e-06 54.7 126 33.3
Glyma.17G014400 Glycine max HOM05D008677 ORTHO05D002434 5.5e-06 54.7 122 28.7
Glyma.17G014600 Glycine max HOM05D008677 ORTHO05D002434 5.5e-06 54.7 130 27.7
Migut.H01829 Erythranthe guttata HOM05D003074 ORTHO05D002434 7.2e-06 54.3 132 27.3
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 7.2e-06 54.3 117 30.8
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 9.4e-06 53.9 119 28.6


User provided reference genes

Program Settings