Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p28570 Brassica napus HOM05D018735 ORTHO05D022006 1.8e-60 235.7 118 100.0
A03p39030 Brassica napus HOM05D018735 ORTHO05D022006 2.0e-59 232.3 118 98.3
BraA06t23463Z Brassica rapa HOM05D018735 ORTHO05D022006 1.6e-45 186.0 92 100.0
BraA08t33902Z Brassica rapa HOM05D018735 ORTHO05D022006 3.6e-45 184.9 92 98.9
C03p02310 Brassica napus HOM05D018735 ORTHO05D022006 4.8e-21 104.8 83 68.7
A10p00450 Brassica napus HOM05D018735 ORTHO05D096750 9.0e-20 100.5 51 94.1
BolC7t44658H Brassica oleracea HOM05D018735 ORTHO05D022006 1.8e-12 76.3 46 82.6
SalBow6G2089 Salvia bowleyana HOM05D003071 ORTHO05D003641 3.2e-09 65.5 60 51.7
A03p62630 Brassica napus HOM05D003071 ORTHO05D003641 9.3e-09 63.9 39 79.5
C07p60180 Brassica napus HOM05D003071 ORTHO05D003641 9.3e-09 63.9 39 79.5
BolC7t46459H Brassica oleracea HOM05D003071 ORTHO05D003641 9.3e-09 63.9 39 79.5
BraA03t15332Z Brassica rapa HOM05D003071 ORTHO05D003641 9.3e-09 63.9 39 79.5
Dinv15749 Davidia involucrata HOM05D003071 ORTHO05D003641 9.3e-09 63.9 39 74.4
Duzib132G0166 Durio zibethinus HOM05D003071 ORTHO05D003641 1.2e-08 63.5 39 74.4
Duzib248G1024 Durio zibethinus HOM05D003071 ORTHO05D003641 1.2e-08 63.5 39 74.4
Thhalv10026060m.g Eutrema salsugineum HOM05D003071 ORTHO05D003641 1.2e-08 63.5 39 76.9
BcaB03g11849 Brassica carinata HOM05D003071 ORTHO05D003641 1.6e-08 63.2 39 74.4
BcaC01g00923 Brassica carinata HOM05D003071 ORTHO05D003641 1.6e-08 63.2 39 74.4
A08p17050 Brassica napus HOM05D003071 ORTHO05D003641 1.6e-08 63.2 39 74.4
C03p85980 Brassica napus HOM05D003071 ORTHO05D003641 1.6e-08 63.2 39 74.4
BolC3t20889H Brassica oleracea HOM05D003071 ORTHO05D003641 1.6e-08 63.2 39 74.4
BraA08t33667Z Brassica rapa HOM05D003071 ORTHO05D003641 1.6e-08 63.2 39 74.4
Gohir.A01G007600 Gossypium hirsutum HOM05D003071 ORTHO05D003641 1.6e-08 63.2 90 46.7
Gohir.D01G007700 Gossypium hirsutum HOM05D003071 ORTHO05D003641 1.6e-08 63.2 90 46.7
AL7G17220 Arabidopsis lyrata HOM05D003071 ORTHO05D003641 2.1e-08 62.8 39 74.4
C01p35540 Brassica napus HOM05D003071 ORTHO05D003641 2.1e-08 62.8 52 61.5
Carub.0007s0625 Capsella rubella HOM05D003071 ORTHO05D003641 2.7e-08 62.4 37 78.4
FAN27G0649 Fragaria x ananassa HOM05D003071 ORTHO05D003641 2.7e-08 62.4 54 53.7
Sp7g31900 Schrenkiella parvula HOM05D003071 ORTHO05D003641 3.5e-08 62.0 39 74.4
BcaNung03362 Brassica carinata HOM05D003071 ORTHO05D003641 4.6e-08 61.6 39 74.4
Gorai.002G008800 Gossypium raimondii HOM05D003071 ORTHO05D003641 4.6e-08 61.6 39 71.8
TAR628G1276 Trochodendron aralioides HOM05D003071 ORTHO05D003641 4.6e-08 61.6 36 77.8
AT4G34150 Arabidopsis thaliana HOM05D003071 ORTHO05D003641 6.0e-08 61.2 36 80.6
MSTRG.20176 Avicennia marina HOM05D003071 ORTHO05D003641 6.0e-08 61.2 44 65.9
Duzib052G0711 Durio zibethinus HOM05D003071 ORTHO05D003641 6.0e-08 61.2 36 77.8
ATR0006G017 Amborella trichopoda HOM05D003071 ORTHO05D003641 7.9e-08 60.8 38 73.7
Gohir.A03G187000 Gossypium hirsutum HOM05D003071 ORTHO05D003641 7.9e-08 60.8 39 74.4
THA.LOC104804383 Tarenaya hassleriana HOM05D003071 ORTHO05D003641 7.9e-08 60.8 39 74.4
BolC1t03514H Brassica oleracea HOM05D003071 ORTHO05D003641 1.0e-07 60.5 40 72.5
CSS0037575 Camellia sinensis var. sinensis HOM05D003071 ORTHO05D003641 1.0e-07 60.5 36 75.0
CARHR242700 Cardamine hirsuta HOM05D003071 ORTHO05D003641 1.0e-07 60.5 39 71.8
Thecc.02G105800 Theobroma cacao HOM05D003071 ORTHO05D003641 1.0e-07 60.5 39 71.8
TAR625G0422 Trochodendron aralioides HOM05D003071 ORTHO05D003641 1.0e-07 60.5 39 69.2
vmacro19518 Vaccinium macrocarpon HOM05D003071 ORTHO05D003641 1.0e-07 60.5 39 71.8
GSVIVG01003176001 Vitis vinifera HOM05D003071 ORTHO05D003641 1.0e-07 60.5 39 71.8
Actinidia17881 Actinidia chinensis HOM05D003071 ORTHO05D003641 1.3e-07 60.1 59 52.5
Actinidia27965 Actinidia chinensis HOM05D003071 ORTHO05D003641 1.3e-07 60.1 36 75.0
Potri.001G301900 Populus trichocarpa HOM05D003071 ORTHO05D003641 1.3e-07 60.1 36 75.0
THA.LOC104807253 Tarenaya hassleriana HOM05D003071 ORTHO05D003641 1.3e-07 60.1 37 75.7
EL10Ac9g22308 Beta vulgaris HOM05D003071 ORTHO05D003641 1.8e-07 59.7 39 71.8
FvH4_2g05480 Fragaria vesca HOM05D003071 ORTHO05D003641 1.8e-07 59.7 59 52.5
FAN15G1650 Fragaria x ananassa HOM05D003071 ORTHO05D003641 1.8e-07 59.7 59 52.5
FAN24G1840 Fragaria x ananassa HOM05D003071 ORTHO05D003641 1.8e-07 59.7 59 52.5
Gohir.D02G207800 Gossypium hirsutum HOM05D003071 ORTHO05D003641 1.8e-07 59.7 39 71.8
Gorai.005G235700 Gossypium raimondii HOM05D003071 ORTHO05D003641 1.8e-07 59.7 39 71.8
Manes.10G077400 Manihot esculenta HOM05D003071 ORTHO05D003641 1.8e-07 59.7 44 61.4
RcHm_v2.0_Chr6g0255751 Rosa chinensis HOM05D003071 ORTHO05D003641 1.8e-07 59.7 54 51.9
Sc08g0001550 Simmondsia chinensis HOM05D003071 ORTHO05D003641 1.8e-07 59.7 39 71.8
Cpa.g.sc200.14 Carica papaya HOM05D003071 ORTHO05D003641 2.3e-07 59.3 36 77.8
COL.COLO4_32616 Corchorus olitorius HOM05D003071 ORTHO05D003641 2.3e-07 59.3 39 69.2
DCAR_029078 Daucus carota HOM05D000231 ORTHO05D003641 2.3e-07 59.3 35 77.1
FAN20G2052 Fragaria x ananassa HOM05D003071 ORTHO05D003641 2.3e-07 59.3 59 50.8
PGR142G1514 Punica granatum HOM05D003071 ORTHO05D003641 2.3e-07 59.3 39 71.8
Oeu001762.2 Olea europaea HOM05D003071 ORTHO05D003641 3.0e-07 58.9 39 71.8
Rhsim05G0087300 Rhododendron simsii HOM05D003071 ORTHO05D003641 3.0e-07 58.9 55 54.5
BcaNung03798 Brassica carinata HOM05D003071 ORTHO05D003641 3.9e-07 58.5 35 77.1
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 3.9e-07 58.5 35 77.1
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 3.9e-07 58.5 35 77.1
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 3.9e-07 58.5 35 77.1
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 3.9e-07 58.5 35 77.1
CSS0003976 Camellia sinensis var. sinensis HOM05D003071 ORTHO05D003641 3.9e-07 58.5 39 69.2
Cfa004559 Carpinus fangiana HOM05D003071 ORTHO05D003641 3.9e-07 58.5 39 69.2
Dinv42181 Davidia involucrata HOM05D003071 ORTHO05D003641 3.9e-07 58.5 39 69.2
MBI16_g12378_MAGBIO Magnolia biondii HOM05D003071 ORTHO05D003641 3.9e-07 58.5 38 71.1
QL02p072870 Quercus lobata HOM05D003071 ORTHO05D003641 3.9e-07 58.5 37 73.0
QL11p034267 Quercus lobata HOM05D003071 ORTHO05D003641 3.9e-07 58.5 37 73.0
RhsimUnG0060900 Rhododendron simsii HOM05D003071 ORTHO05D003641 3.9e-07 58.5 36 75.0
CAN.G1231.18 Capsicum annuum HOM05D003071 ORTHO05D003641 5.1e-07 58.2 39 69.2
Gorai.013G046300 Gossypium raimondii HOM05D003071 ORTHO05D003641 5.1e-07 58.2 39 66.7
MD05G1087200 Malus domestica HOM05D003071 ORTHO05D003641 5.1e-07 58.2 39 66.7
PSO170G0220 Papaver somniferum HOM05D003071 ORTHO05D003641 5.1e-07 58.2 47 61.7
PSO210G2766 Papaver somniferum HOM05D003071 ORTHO05D003641 5.1e-07 58.2 47 61.7
PSO675G7902 Papaver somniferum HOM05D003071 ORTHO05D003641 5.1e-07 58.2 44 61.4
DCAR_003613 Daucus carota HOM05D003071 ORTHO05D003641 6.7e-07 57.8 36 75.0
Gohir.A13G042900 Gossypium hirsutum HOM05D003071 ORTHO05D003641 6.7e-07 57.8 38 68.4
Oeu017475.1 Olea europaea HOM05D003071 ORTHO05D003641 6.7e-07 57.8 38 68.4
Solyc01g107740.3 Solanum lycopersicum HOM05D003071 ORTHO05D003641 6.7e-07 57.8 39 66.7
Sopen01g049920 Solanum pennellii HOM05D003071 ORTHO05D003641 6.7e-07 57.8 39 66.7
SGA_v2.0_scaffold225G43090 Striga asiatica HOM05D003071 ORTHO05D003641 6.7e-07 57.8 37 73.0
TWI79G1016 Tripterygium wilfordii HOM05D003071 ORTHO05D003641 6.7e-07 57.8 44 61.4
TAR628G0589 Trochodendron aralioides HOM05D003071 ORTHO05D003641 6.7e-07 57.8 37 70.3
TAR628G1177 Trochodendron aralioides HOM05D003071 ORTHO05D003641 6.7e-07 57.8 37 70.3
Aqoxy6G02907 Aquilegia oxysepala HOM05D003071 ORTHO05D003641 8.7e-07 57.4 39 66.7
Cc02_g19120 Coffea canephora HOM05D003071 ORTHO05D003641 8.7e-07 57.4 39 69.2
MD00G1045300 Malus domestica HOM05D003071 ORTHO05D003641 8.7e-07 57.4 36 72.2
PSO541G2166 Papaver somniferum HOM05D003071 ORTHO05D003641 8.7e-07 57.4 44 61.4
SGA_v2.0_scaffold32G13045 Striga asiatica HOM05D003071 ORTHO05D003641 8.7e-07 57.4 45 62.2
TWI75G0163 Tripterygium wilfordii HOM05D003071 ORTHO05D003641 8.7e-07 57.4 44 59.1
Actinidia00421 Actinidia chinensis HOM05D003071 ORTHO05D003641 1.1e-06 57.0 39 64.1
AUR62010270 Chenopodium quinoa HOM05D003071 ORTHO05D003641 1.1e-06 57.0 36 69.4
Haze_10152 Corylus avellana HOM05D003071 ORTHO05D003641 1.1e-06 57.0 39 66.7
Sabra16G0189900 Salix brachista HOM05D003071 ORTHO05D003641 1.1e-06 57.0 36 72.2
HPP92_015276 Vanilla planifolia HOM05D003071 ORTHO05D003641 1.1e-06 57.0 36 72.2
GSVIVG01009437001 Vitis vinifera HOM05D003071 ORTHO05D003641 1.1e-06 57.0 36 72.2
Aa31LG2G16610 Aethionema arabicum HOM05D003071 ORTHO05D003641 1.5e-06 56.6 39 66.7
CiPaw.05G009500 Carya illinoinensis HOM05D003071 ORTHO05D003641 1.5e-06 56.6 39 64.1
CsaV3_7G008320 Cucumis sativus L. HOM05D003071 ORTHO05D003641 1.5e-06 56.6 36 72.2
Nn5g30392 Nelumbo nucifera HOM05D003071 ORTHO05D003641 1.5e-06 56.6 39 66.7
Peaxi162Scf00016g02249 Petunia axillaris HOM05D003071 ORTHO05D003641 1.5e-06 56.6 37 70.3
Prupe.8G131800 Prunus persica HOM05D003071 ORTHO05D003641 1.5e-06 56.6 61 52.5
QL11p027891 Quercus lobata HOM05D003071 ORTHO05D003641 1.5e-06 56.6 35 74.3
Sabra16G0190000 Salix brachista HOM05D003071 ORTHO05D003641 1.5e-06 56.6 36 72.2
Medtr5g004870 Medicago truncatula HOM05D003071 ORTHO05D003641 1.9e-06 56.2 39 69.2
Peaxi162Scf00003g02441 Petunia axillaris HOM05D003071 ORTHO05D003641 1.9e-06 56.2 37 70.3
DCAR_022000 Daucus carota HOM05D003071 ORTHO05D003641 2.5e-06 55.8 44 59.1
Eucgr.I01113 Eucalyptus grandis HOM05D003071 ORTHO05D003641 2.5e-06 55.8 36 72.2
PGSC0003DMG402025869 Solanum tuberosum HOM05D003071 ORTHO05D003641 2.5e-06 55.8 39 66.7
Haze_10149 Corylus avellana HOM05D003071 ORTHO05D003641 3.3e-06 55.5 44 61.4
Migut.B00376 Erythranthe guttata HOM05D003071 ORTHO05D003641 3.3e-06 55.5 39 66.7
Sed0005673 Sechium edule HOM05D003071 ORTHO05D003641 3.3e-06 55.5 39 69.2
Hund00140 Selenicereus undatus HOM05D003071 ORTHO05D003641 3.3e-06 55.5 39 66.7
unitig_21.g20737 Utricularia gibba HOM05D003071 ORTHO05D003641 3.3e-06 55.5 37 70.3
VMungo1215G2306 Vigna mungo HOM05D003071 ORTHO05D003641 3.3e-06 55.5 39 66.7
CiPaw.05G009600 Carya illinoinensis HOM05D003071 ORTHO05D003641 4.3e-06 55.1 37 67.6
Phvul.002G053900 Phaseolus vulgaris HOM05D003071 ORTHO05D003641 4.3e-06 55.1 39 66.7
Hma1.2p1_0796F.1_g219040 Hydrangea macrophylla HOM05D003071 ORTHO05D003641 5.6e-06 54.7 39 66.7
Lalb_Chr16g0376241 Lupinus albus HOM05D003071 ORTHO05D003641 5.6e-06 54.7 38 71.1
Nitab4.5_0002543g0110 Nicotiana tabacum HOM05D003071 ORTHO05D003641 5.6e-06 54.7 37 67.6
Nitab4.5_0003771g0040 Nicotiana tabacum HOM05D003071 ORTHO05D003641 5.6e-06 54.7 37 67.6
Solyc10g050060.2 Solanum lycopersicum HOM05D003071 ORTHO05D003641 5.6e-06 54.7 37 67.6
Sopen10g021200 Solanum pennellii HOM05D003071 ORTHO05D003641 5.6e-06 54.7 37 67.6
PGSC0003DMG400006217 Solanum tuberosum HOM05D003071 ORTHO05D003641 5.6e-06 54.7 37 67.6
Psat4g228360 Pisum sativum HOM05D003071 ORTHO05D003641 7.4e-06 54.3 39 66.7
Sabra09G0075000 Salix brachista HOM05D003071 ORTHO05D003641 7.4e-06 54.3 36 66.7
Ca_24339_v3 Cicer arietinum L. HOM05D003071 ORTHO05D003641 9.6e-06 53.9 39 66.7
ECA234G1195 Erigeron canadensis HOM05D003071 ORTHO05D003641 9.6e-06 53.9 42 59.5
Glyma.01G244500 Glycine max HOM05D003071 ORTHO05D003641 9.6e-06 53.9 39 64.1
Glyma.11G000700 Glycine max HOM05D003071 ORTHO05D003641 9.6e-06 53.9 39 64.1
Nn1g08103 Nelumbo nucifera HOM05D003071 ORTHO05D003641 9.6e-06 53.9 36 69.4
Sed0025200 Sechium edule HOM05D003071 ORTHO05D003641 9.6e-06 53.9 36 69.4


User provided reference genes

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