Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 1.1e-140 503.4 271 100.0
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 6.0e-136 487.6 273 97.8
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 3.0e-135 485.3 273 96.3
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 3.0e-135 485.3 273 96.3
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 9.6e-134 480.3 271 94.1
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 1.1e-126 456.8 271 90.0
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 3.8e-114 415.2 264 84.8
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 3.4e-99 365.5 263 77.6
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 5.9e-99 364.8 263 78.7
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 2.1e-96 356.3 264 76.9
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 4.6e-96 355.1 264 77.7
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 9.7e-86 320.9 264 73.1
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 2.3e-79 299.7 254 72.4
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 4.5e-59 232.3 176 71.0
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 8.0e-56 221.5 261 49.4
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 2.0e-54 216.9 261 49.4
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 7.5e-54 214.9 256 50.0
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.3e-53 214.2 257 49.8
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.3e-53 214.2 256 49.6
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 3.7e-53 212.6 256 54.7
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 7.0e-52 208.4 265 53.2
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 7.8e-51 204.9 259 51.4
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 5.0e-50 202.2 259 49.0
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 8.6e-50 201.4 262 49.6
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.9e-49 200.3 263 49.8
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.9e-49 200.3 260 48.8
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.5e-49 199.9 262 52.3
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 3.3e-49 199.5 263 49.8
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 9.5e-49 198.0 262 52.3
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.2e-48 197.6 263 49.8
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 2.8e-48 196.4 258 48.4
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.8e-48 196.4 282 47.9
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 8.0e-48 194.9 270 48.5
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 8.0e-48 194.9 288 47.9
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.0e-47 194.5 256 49.6
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.4e-47 194.1 264 48.1
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 1.4e-47 194.1 265 49.4
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.8e-47 193.7 264 46.6
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 1.8e-47 193.7 255 50.2
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 2.3e-47 193.4 262 45.4
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.3e-47 193.4 262 49.2
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 5.2e-47 192.2 270 50.7
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.2e-47 192.2 270 48.5
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 6.8e-47 191.8 263 48.7
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 1.2e-46 191.0 254 50.0
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 1.2e-46 191.0 262 49.6
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.2e-46 191.0 268 45.5
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.5e-46 190.7 266 50.0
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.5e-46 190.7 270 47.0
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 2.6e-46 189.9 254 46.5
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 3.4e-46 189.5 265 48.3
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 5.8e-46 188.7 269 49.8
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 5.8e-46 188.7 269 45.7
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 9.8e-46 188.0 270 47.4
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 9.8e-46 188.0 257 49.8
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.3e-45 187.6 261 46.7
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.7e-45 187.2 263 49.0
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 6.4e-45 185.3 266 49.2
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 8.3e-45 184.9 231 49.8
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 1.1e-44 184.5 252 47.6
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 1.9e-44 183.7 259 47.1
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 2.4e-44 183.3 254 48.4
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 4.1e-44 182.6 258 49.6
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 7.0e-44 181.8 254 48.0
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 9.2e-44 181.4 266 44.7
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.6e-43 180.6 253 49.0
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.6e-43 180.6 253 49.0
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.0e-43 180.3 257 46.7
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 6.0e-43 178.7 257 46.3
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.7e-42 177.2 261 45.6
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 3.9e-42 176.0 264 43.2
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 3.9e-42 176.0 268 47.0
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 3.9e-42 176.0 263 46.0
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 3.9e-42 176.0 173 53.2
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 8.6e-42 174.9 259 42.5
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 1.1e-41 174.5 266 47.4
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 2.5e-41 173.3 260 46.2
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 3.3e-41 172.9 256 46.9
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 2.1e-40 170.2 267 46.1
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 3.6e-40 169.5 265 46.8
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 8.0e-40 168.3 233 48.9
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.4e-39 167.5 172 52.9
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 3.1e-39 166.4 262 45.0
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 3.1e-39 166.4 260 43.5
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 3.1e-39 166.4 262 46.2
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 3.1e-39 166.4 260 44.2
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 3.1e-39 166.4 262 45.0
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 4.0e-39 166.0 169 53.3
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.0e-39 166.0 262 42.4
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 5.2e-39 165.6 255 46.3
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 5.2e-39 165.6 249 40.6
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 6.8e-39 165.2 263 43.7
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.6e-38 163.3 256 45.7
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 2.6e-38 163.3 259 45.6
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 3.4e-38 162.9 260 42.7
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 3.4e-38 162.9 257 43.2
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 3.4e-38 162.9 254 46.9
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.4e-38 162.9 253 45.5
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 5.8e-38 162.2 252 40.1
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 7.5e-38 161.8 267 45.7
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 7.5e-38 161.8 256 45.7
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 7.5e-38 161.8 211 50.2
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 1.7e-37 160.6 252 42.9
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 6.4e-37 158.7 273 41.4
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.1e-36 157.9 324 39.2
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.1e-36 157.9 290 41.0
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 1.9e-36 157.1 252 43.3
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 9.2e-36 154.8 278 41.4
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.2e-35 154.5 262 40.8
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 2.7e-35 153.3 269 42.0
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.0e-34 151.4 180 56.1
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 6.6e-34 148.7 257 39.7
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.9e-33 147.1 258 40.7
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 4.3e-33 146.0 267 39.7
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 6.2e-32 142.1 270 41.9
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 1.4e-31 141.0 254 42.1
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 4.0e-31 139.4 165 47.3
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 4.0e-31 139.4 269 43.5
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 8.9e-31 138.3 297 38.0
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 9.9e-30 134.8 269 41.6
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.3e-29 134.4 260 39.6
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 5.1e-26 122.5 364 32.4
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.1e-25 121.3 147 44.2
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 5.6e-25 119.0 133 48.9
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 4.7e-24 115.9 255 42.4
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.4e-23 114.4 189 40.2
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 5.2e-23 112.5 153 49.0
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 8.9e-23 111.7 142 45.8
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.0e-22 110.5 135 48.1
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 8.4e-21 105.1 206 39.3
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 9.2e-20 101.7 216 33.8
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.0e-18 98.2 147 40.8
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 8.7e-18 95.1 91 49.5
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.5e-17 94.4 132 52.3
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.3e-17 93.2 131 55.0
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 3.3e-17 93.2 145 37.2
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 8.1e-16 88.6 162 39.5
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.2e-14 84.7 256 35.2
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 7.6e-14 82.0 126 40.5
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.7e-13 80.9 151 32.5
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 1.7e-13 80.9 198 39.4
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 8.4e-13 78.6 57 59.6
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 3.5e-11 73.2 132 47.0
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 6.0e-11 72.4 55 61.8
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-06 58.2 39 61.5
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-06 58.2 39 61.5
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 3.4e-06 56.6 75 36.0


User provided reference genes

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