Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 1.6e-200 702.6 356 100.0
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 1.1e-193 679.9 356 97.5
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 4.5e-192 674.5 356 96.6
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 7.7e-192 673.7 356 96.1
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 1.7e-191 672.5 356 96.1
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 5.0e-191 671.0 356 96.1
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 1.6e-189 666.0 356 94.1
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 1.1e-185 653.3 356 91.0
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 5.9e-184 647.5 357 92.2
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 1.3e-183 646.4 356 91.3
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 1.6e-181 639.4 357 91.0
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 9.8e-179 630.2 357 89.1
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 3.2e-169 598.6 358 84.4
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 2.4e-156 555.8 359 77.4
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 7.1e-153 544.3 357 80.1
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 3.5e-152 542.0 359 74.7
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 6.0e-152 541.2 354 76.3
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 2.3e-151 539.3 354 75.4
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 5.1e-151 538.1 361 74.8
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 1.1e-150 537.0 359 74.7
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 1.9e-150 536.2 356 74.7
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 1.9e-150 536.2 355 73.8
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 1.9e-150 536.2 359 74.1
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 2.5e-150 535.8 354 74.6
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 1.6e-149 533.1 360 74.2
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 2.8e-149 532.3 361 74.8
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 3.6e-149 531.9 362 74.6
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 3.1e-148 528.9 359 73.8
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 2.6e-147 525.8 360 73.3
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 4.4e-147 525.0 359 72.1
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 7.6e-147 524.2 359 72.7
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 7.6e-147 524.2 359 72.7
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 9.9e-147 523.9 354 73.7
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 9.9e-147 523.9 358 73.5
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 3.8e-146 521.9 359 73.0
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 5.4e-145 518.1 355 72.4
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 5.4e-145 518.1 362 72.4
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.6e-144 516.5 354 72.0
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 2.1e-144 516.2 354 72.6
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 3.5e-144 515.4 359 72.4
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 3.5e-144 515.4 355 71.8
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.0e-144 514.6 356 73.3
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.0e-144 514.6 356 73.3
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 6.0e-144 514.6 359 71.0
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 3.9e-143 511.9 359 71.3
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 5.1e-143 511.5 356 71.6
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 1.9e-142 509.6 359 69.4
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 3.3e-142 508.8 364 70.6
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 7.3e-142 507.7 364 71.4
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 9.6e-142 507.3 359 68.5
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 2.1e-141 506.1 356 71.1
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 4.8e-141 505.0 356 71.6
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 4.8e-141 505.0 362 70.7
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 8.1e-141 504.2 356 71.1
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 3.1e-140 502.3 360 70.0
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 3.1e-140 502.3 356 71.6
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 4.0e-140 501.9 355 71.5
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 5.3e-140 501.5 356 71.6
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 4.5e-139 498.4 356 70.5
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 9.9e-139 497.3 357 70.0
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 2.9e-138 495.7 359 69.6
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 3.8e-138 495.4 356 69.9
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.2e-136 490.3 362 68.5
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 2.1e-136 489.6 357 70.3
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 1.3e-135 486.9 385 65.2
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 5.1e-135 485.0 356 67.7
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 4.3e-134 481.9 362 68.0
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 7.4e-134 481.1 353 69.4
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 1.4e-132 476.9 355 67.6
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 3.1e-132 475.7 356 66.0
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 4.0e-132 475.3 362 68.2
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 4.5e-131 471.9 350 68.6
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 1.3e-130 470.3 390 62.3
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.7e-130 469.9 350 67.7
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 3.8e-130 468.8 350 67.4
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 8.4e-130 467.6 360 64.4
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 2.7e-128 462.6 312 73.1
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 1.1e-126 457.2 356 64.0
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 3.1e-124 449.1 358 62.6
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 9.0e-124 447.6 362 64.4
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 1.9e-121 439.9 352 65.6
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 4.2e-121 438.7 371 63.1
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 2.7e-120 436.0 375 62.1
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 6.7e-119 431.4 474 52.5
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 1.1e-116 424.1 356 59.6
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 2.4e-116 422.9 356 59.3
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 4.1e-116 422.2 356 61.8
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 2.2e-114 416.4 353 59.5
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 5.1e-111 405.2 357 60.2
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 2.8e-101 372.9 365 54.8
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 8.2e-101 371.3 350 52.0
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.2e-96 357.5 257 68.9
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 3.0e-95 352.8 258 69.4
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 4.0e-95 352.4 251 71.3
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 9.7e-94 347.8 374 48.1
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 8.2e-93 344.7 252 66.7
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.2e-91 340.9 355 47.6
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 7.7e-91 338.2 357 47.6
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 1.8e-87 327.0 292 58.9
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.3e-85 320.9 356 50.8
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 5.4e-84 315.5 362 46.4
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.5e-83 312.4 337 46.9
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 5.0e-82 308.9 347 46.7
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 1.4e-76 290.8 197 72.1
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.8e-76 290.4 204 68.1
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.6e-72 277.3 353 41.6
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 9.8e-70 268.1 355 42.0
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 6.2e-64 248.8 355 40.0
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.8e-55 220.7 149 73.8
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 1.4e-44 184.5 148 63.5
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 5.1e-42 176.0 183 56.3
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 3.8e-37 159.8 149 61.1
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 3.8e-37 159.8 149 61.1
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 4.9e-37 159.5 405 29.4
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 1.9e-36 157.5 208 43.8
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.5e-33 147.9 98 72.4
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 2.5e-33 147.1 360 31.4
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 3.3e-33 146.7 101 70.3
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 4.8e-32 142.9 147 56.5
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 2.6e-30 137.1 85 77.6
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 1.1e-28 131.7 100 65.0
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 2.3e-26 124.0 76 86.8
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 5.1e-26 122.9 128 51.6
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 7.4e-25 119.0 127 53.5
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 6.9e-23 112.5 90 63.3
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 9.9e-22 108.6 85 68.2
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.9e-21 107.1 85 67.1
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 1.1e-20 105.1 96 56.2
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.6e-16 91.3 94 57.4
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 3.7e-16 90.1 137 41.6
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 6.5e-13 79.3 49 73.5


User provided reference genes

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