Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 2.6e-47 191.8 105 100.0
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 7.2e-45 183.7 105 95.2
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 7.2e-45 183.7 105 95.2
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 7.2e-45 183.7 105 95.2
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 5.1e-43 177.6 105 91.4
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 2.5e-42 175.3 105 90.5
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 6.9e-40 167.2 105 88.6
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.5e-39 166.0 105 87.6
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 5.9e-39 164.1 107 85.0
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 5.9e-39 164.1 107 84.1
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.9e-37 159.1 105 84.8
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 2.5e-37 158.7 107 81.3
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 2.1e-36 155.6 107 79.4
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 4.7e-36 154.5 107 80.4
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 4.7e-36 154.5 107 80.4
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 1.1e-29 133.3 107 72.0
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 9.4e-29 130.2 105 71.4
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 3.6e-28 128.3 106 68.9
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.4e-27 126.3 106 67.9
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-27 126.3 106 67.9
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.4e-27 126.3 106 67.9
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 1.8e-27 125.9 107 69.2
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 4.0e-27 124.8 106 67.0
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 6.7e-27 124.0 107 68.2
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 8.8e-27 123.6 107 68.2
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 8.8e-27 123.6 106 65.1
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.0e-26 122.5 112 66.1
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 3.3e-26 121.7 106 66.0
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 5.7e-26 120.9 106 66.0
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 4.8e-25 117.9 107 65.4
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.8e-24 115.9 106 65.1
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 3.5e-23 111.7 111 62.2
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 6.5e-22 107.5 107 61.7
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 5.2e-19 97.8 106 55.7
A03p42000 Brassica napus HOM05D004268 ORTHO05D004958 6.8e-19 97.4 107 56.1
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 2.6e-18 95.5 111 54.1
BcaB04g19135 Brassica carinata HOM05D004268 ORTHO05D004958 7.5e-18 94.0 107 55.1
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 2.2e-17 92.4 107 54.2
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 2.8e-17 92.0 113 54.0
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 51.4
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.4e-16 89.7 109 56.0
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.4e-16 89.7 105 51.4
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 2.4e-16 89.0 111 54.1
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 9.1e-16 87.0 107 51.4
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.0e-15 85.9 106 54.7
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 2.7e-15 85.5 105 54.3
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 4.5e-15 84.7 107 54.2
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 4.5e-15 84.7 106 53.8
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 7.7e-15 84.0 106 50.9
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.0e-14 83.6 109 51.4
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.0e-14 83.6 109 51.4
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 1.7e-14 82.8 107 49.5
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 1.7e-14 82.8 106 51.9
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 2.9e-14 82.0 110 54.5
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.9e-14 82.0 107 52.3
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.9e-14 82.0 107 52.3
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 3.8e-14 81.6 110 53.6
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 3.8e-14 81.6 107 50.5
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 5.0e-14 81.3 107 55.1
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 5.0e-14 81.3 107 56.1
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 5.0e-14 81.3 107 48.6
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 6.5e-14 80.9 105 48.6
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 6.5e-14 80.9 107 50.5
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 1.1e-13 80.1 107 49.5
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 1.1e-13 80.1 108 50.9
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.9e-13 79.3 107 49.5
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 2.5e-13 79.0 109 53.2
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 3.2e-13 78.6 105 50.5
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 4.2e-13 78.2 105 51.4
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 7.2e-13 77.4 105 51.4
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 9.5e-13 77.0 114 48.2
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 9.5e-13 77.0 102 49.0
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 9.5e-13 77.0 109 48.6
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.6e-12 76.3 111 51.4
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.1e-12 75.9 105 45.7
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.7e-12 75.5 117 48.7
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 3.6e-12 75.1 108 44.4
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 4.7e-12 74.7 110 46.4
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 4.7e-12 74.7 105 49.5
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 4.7e-12 74.7 107 47.7
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 6.1e-12 74.3 105 47.6
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 1.0e-11 73.6 108 46.3
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 1.0e-11 73.6 107 49.5
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 1.0e-11 73.6 109 46.8
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.0e-11 73.6 109 44.0
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 1.8e-11 72.8 104 48.1
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 2.3e-11 72.4 108 50.0
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 3.0e-11 72.0 104 49.0
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 5.2e-11 71.2 105 49.5
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 5.2e-11 71.2 110 47.3
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 6.8e-11 70.9 107 45.8
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 6.8e-11 70.9 109 44.0
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 6.8e-11 70.9 106 48.1
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 6.8e-11 70.9 105 46.7
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 8.8e-11 70.5 86 50.0
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 8.8e-11 70.5 108 47.2
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.2e-10 70.1 105 47.6
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.5e-10 69.7 103 46.6
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 2.6e-10 68.9 107 44.9
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 2.6e-10 68.9 105 47.6
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 7.5e-10 67.4 108 44.4
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 7.5e-10 67.4 109 46.8
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 9.8e-10 67.0 112 44.6
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.7e-09 66.2 112 47.3
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.2e-09 65.9 107 45.8
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 2.2e-09 65.9 105 46.7
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.2e-09 65.9 40 80.0
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.8e-09 65.5 107 44.9
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 3.7e-09 65.1 110 45.5
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 3.7e-09 65.1 106 49.1
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 3.7e-09 65.1 109 41.3
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 3.7e-09 65.1 86 48.8
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 3.7e-09 65.1 112 44.6
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 3.7e-09 65.1 106 45.3
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 4.9e-09 64.7 106 46.2
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 4.9e-09 64.7 106 46.2
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.9e-09 64.7 107 44.9
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 4.9e-09 64.7 107 44.9
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 6.3e-09 64.3 95 50.5
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.3e-09 64.3 106 46.2
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 8.3e-09 63.9 106 46.2
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 8.3e-09 63.9 109 44.0
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 1.1e-08 63.5 102 45.1
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.8e-08 62.8 108 45.4
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.8e-08 62.8 106 43.4
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 2.4e-08 62.4 107 43.9
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 3.1e-08 62.0 106 46.2
A03p43270 Brassica napus HOM05D046874 ORTHO05D042050 4.1e-08 61.6 58 60.3
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 4.1e-08 61.6 108 41.7
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 5.4e-08 61.2 113 39.8
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 1.2e-07 60.1 107 43.9
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 3.5e-07 58.5 109 45.9
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 4.5e-07 58.2 111 47.7
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 4.5e-07 58.2 106 39.6
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 1.0e-06 57.0 82 45.1
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.0e-06 57.0 40 77.5
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 1.3e-06 56.6 113 43.4
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 2.3e-06 55.8 108 43.5
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.3e-06 55.8 103 38.8
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 2.3e-06 55.8 56 53.6
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 2.9e-06 55.5 108 38.0
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 3.8e-06 55.1 38 73.7
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 5.0e-06 54.7 118 36.4
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 8.6e-06 53.9 108 42.6


User provided reference genes

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