Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 0.0e+00 1884.8 1121 100.0
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 0.0e+00 1877.1 1121 99.7
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 0.0e+00 1809.7 1123 95.4
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 0.0e+00 1809.7 1123 95.4
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 0.0e+00 1807.3 1123 95.0
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 0.0e+00 1579.3 1123 86.7
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 0.0e+00 1379.4 1182 73.9
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 0.0e+00 1350.5 1183 71.7
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 0.0e+00 1343.9 1180 71.6
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 0.0e+00 1325.1 1175 70.0
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 0.0e+00 1298.5 1183 70.6
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 3.3e-297 1025.4 981 67.4
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 1.9e-289 999.6 1136 59.9
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 1.5e-278 963.4 1260 53.4
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 5.5e-260 901.7 1254 51.0
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 5.9e-246 855.1 1190 54.5
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 6.5e-160 569.3 1182 41.4
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 5.3e-154 549.7 1231 39.7
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 2.9e-152 543.9 1187 39.3
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 2.3e-149 534.3 1201 39.1
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 3.3e-148 530.4 1183 39.3
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 2.2e-147 527.7 1182 39.4
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 2.2e-147 527.7 1187 39.4
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 3.7e-147 526.9 1179 39.4
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 3.8e-144 516.9 1199 39.8
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 6.5e-144 516.2 1206 38.7
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 1.2e-142 511.9 814 50.1
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 6.7e-141 506.1 1258 37.5
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 8.2e-139 499.2 1252 36.7
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 9.1e-138 495.7 1240 36.9
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 5.9e-137 493.0 1220 37.0
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 7.7e-137 492.7 1243 37.0
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 8.5e-136 489.2 1185 38.1
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 1.5e-135 488.4 1234 37.6
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 6.1e-134 483.0 1189 38.0
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 1.8e-133 481.5 1234 37.4
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 1.8e-133 481.5 1265 38.7
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 5.2e-133 479.9 1260 36.9
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 5.2e-133 479.9 1255 36.5
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 6.7e-133 479.6 1255 36.6
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 2.6e-132 477.6 1257 36.0
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 8.2e-131 472.6 1256 36.9
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 6.5e-128 463.0 1180 37.2
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 6.5e-128 463.0 1206 37.5
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 2.5e-127 461.1 1152 38.0
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 2.5e-127 461.1 1263 35.2
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 4.7e-126 456.8 1265 35.7
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 1.5e-124 451.8 1263 35.4
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 4.4e-124 450.3 1256 36.0
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 1.7e-123 448.4 1180 36.5
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 2.2e-123 448.0 1190 37.2
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 4.8e-123 446.8 1188 36.6
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.4e-122 445.3 1183 36.7
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 5.4e-122 443.4 1162 36.3
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 7.7e-121 439.5 1184 36.4
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 1.3e-120 438.7 1189 36.9
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 1.3e-120 438.7 1174 35.9
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 1.0e-117 429.1 1211 34.3
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 4.4e-116 423.7 1119 35.3
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 5.4e-114 416.8 1222 32.7
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 7.0e-114 416.4 1222 34.6
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 2.7e-113 414.5 1224 34.6
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 3.5e-113 414.1 1208 35.8
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 7.8e-113 412.9 1164 35.5
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 1.3e-112 412.1 1187 35.4
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 2.9e-112 411.0 1162 36.6
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 4.0e-109 400.6 1184 35.1
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 2.0e-108 398.3 1124 35.8
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 3.5e-105 387.5 1222 33.9
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.3e-104 384.8 1405 31.5
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 4.3e-103 380.6 1264 33.8
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 1.2e-102 379.0 1154 35.0
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 4.7e-102 377.1 1214 34.9
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 2.3e-101 374.8 1146 35.3
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 3.1e-101 374.4 1120 35.8
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 1.2e-100 372.5 1255 34.9
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 1.9e-98 365.2 1173 33.8
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 4.1e-98 364.0 1209 34.3
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 7.8e-97 359.8 1091 34.6
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 8.6e-96 356.3 1284 35.0
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 4.3e-95 354.0 1153 34.7
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 4.0e-93 347.4 1153 34.6
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 5.2e-93 347.1 1073 34.9
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 6.8e-93 346.7 1186 33.1
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 1.5e-92 345.5 1175 31.6
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 1.3e-91 342.4 1077 34.7
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 6.4e-91 340.1 1168 31.2
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 1.5e-87 328.9 1094 34.5
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 1.9e-87 328.6 1200 32.7
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 4.3e-87 327.4 1046 34.1
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 4.7e-86 323.9 1107 33.3
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 1.3e-83 315.8 1130 32.0
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 6.0e-81 307.0 1122 33.7
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 2.3e-80 305.1 1199 31.8
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 3.8e-75 287.7 1145 31.4
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 3.6e-70 271.2 1075 32.6
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 1.5e-68 265.8 1110 32.5
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 2.6e-68 265.0 1014 32.5
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 5.8e-68 263.8 1171 30.0
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 2.1e-65 255.4 1170 29.6
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 1.5e-63 249.2 347 46.7
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 8.1e-62 243.4 360 46.9
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 4.9e-59 234.2 1153 29.1
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 7.4e-55 220.3 1013 30.7
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.6e-54 219.2 1275 29.5
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 7.1e-50 203.8 1013 28.4
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 9.3e-50 203.4 253 49.8
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 5.1e-48 197.6 143 69.9
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 3.7e-46 191.4 1223 29.2
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 2.4e-45 188.7 968 30.0
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 1.2e-44 186.4 129 69.0
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 4.5e-44 184.5 626 30.8
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 5.9e-44 184.1 276 44.6
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.9e-42 179.1 844 28.1
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 6.1e-41 174.1 141 69.5
BolC1t04239H Brassica oleracea HOM05D004845 ORTHO05D005957 1.8e-40 172.6 140 70.0
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 2.2e-38 165.6 540 31.5
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 4.1e-37 161.4 953 28.4
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 3.8e-35 154.8 1011 25.3
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 2.3e-32 145.6 156 56.4
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 5.1e-32 144.4 458 31.7
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 3.3e-31 141.7 571 29.8
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 3.7e-30 138.3 356 35.1
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 4.8e-30 137.9 365 33.7
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 1.2e-28 133.3 355 33.2
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 5.9e-28 131.0 286 39.5
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 2.0e-23 115.9 403 28.0
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 3.7e-22 111.7 941 27.2
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 2.4e-21 109.0 151 44.4
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 7.0e-21 107.5 166 36.1
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 6.5e-19 100.9 104 46.2
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 1.1e-18 100.1 233 36.5
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 1.2e-17 96.7 61 73.8
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 4.7e-17 94.7 114 45.6
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 4.7e-17 94.7 538 27.0
BolC1t04238H Brassica oleracea HOM05D004845 ORTHO05D005957 6.8e-16 90.9 54 79.6
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 3.7e-14 85.1 72 54.2
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 4.1e-13 81.6 57 68.4
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.5e-10 73.2 136 45.6
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 7.2e-10 70.9 250 29.6
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 4.7e-09 68.2 54 63.0
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 5.2e-08 64.7 130 45.4
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 1.2e-07 63.5 62 54.8
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 8.3e-06 57.4 199 31.2


User provided reference genes

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