Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 3.1e-99 365.2 190 100.0
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 3.4e-85 318.5 174 96.0
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 2.7e-82 308.9 175 93.7
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 7.8e-66 254.2 152 90.1
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 4.5e-45 185.3 123 83.7
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 4.5e-45 185.3 123 83.7
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 7.6e-45 184.5 123 82.9
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 9.9e-45 184.1 123 82.9
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 3.8e-44 182.2 123 82.1
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 4.9e-44 181.8 123 82.9
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 6.4e-44 181.4 139 73.4
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 6.4e-44 181.4 123 82.1
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 6.4e-44 181.4 123 81.3
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 1.9e-43 179.9 123 82.9
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 4.2e-43 178.7 123 79.7
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 4.2e-43 178.7 127 78.0
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 3.4e-37 159.1 79 100.0
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 1.4e-35 153.7 211 48.3
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 9.3e-35 151.0 161 59.6
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 1.0e-33 147.5 107 76.6
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 1.3e-33 147.1 80 93.8
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.1e-30 137.5 118 65.3
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.1e-30 137.5 189 48.7
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.4e-30 137.1 123 64.2
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.2e-29 134.0 143 56.6
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.5e-29 133.7 123 63.4
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 4.5e-29 132.1 112 65.2
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 5.9e-29 131.7 123 62.6
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.0e-28 131.0 112 65.2
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 1.3e-28 130.6 147 55.1
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.3e-28 130.6 144 51.4
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 1.7e-28 130.2 123 60.2
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.7e-28 130.2 123 62.6
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 1.7e-28 130.2 157 51.0
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 2.9e-28 129.4 144 52.8
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 5.0e-28 128.6 146 52.7
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 6.5e-28 128.3 150 56.7
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 6.5e-28 128.3 125 60.0
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 6.5e-28 128.3 145 53.8
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 8.4e-28 127.9 122 60.7
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 8.4e-28 127.9 122 60.7
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 8.4e-28 127.9 122 61.5
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 1.1e-27 127.5 118 61.9
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 1.9e-27 126.7 193 46.1
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 2.5e-27 126.3 123 60.2
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.2e-27 125.9 133 58.6
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 3.2e-27 125.9 122 60.7
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 4.2e-27 125.6 120 61.7
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 7.2e-27 124.8 124 59.7
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 7.2e-27 124.8 120 60.8
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 9.3e-27 124.4 132 56.1
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 9.3e-27 124.4 124 59.7
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 1.6e-26 123.6 120 60.8
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 2.1e-26 123.2 122 59.0
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 2.1e-26 123.2 148 52.0
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 2.7e-26 122.9 135 55.6
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 2.7e-26 122.9 145 52.4
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 3.5e-26 122.5 137 50.4
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.0e-25 120.9 123 59.3
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 1.0e-25 120.9 128 54.7
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.3e-25 120.6 174 46.6
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.8e-25 120.2 141 51.8
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 2.3e-25 119.8 118 61.0
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.3e-25 119.8 149 49.7
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 2.3e-25 119.8 150 50.0
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 3.0e-25 119.4 120 61.7
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 5.1e-25 118.6 142 50.7
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 5.1e-25 118.6 148 52.7
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 8.7e-25 117.9 135 53.3
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 1.5e-24 117.1 123 54.5
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 1.9e-24 116.7 127 59.8
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 3.3e-24 115.9 171 44.4
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 3.3e-24 115.9 144 50.7
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 1.6e-23 113.6 138 53.6
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 1.6e-23 113.6 123 55.3
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.6e-23 113.6 133 53.4
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 2.8e-23 112.8 119 55.5
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 2.8e-23 112.8 145 50.3
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 3.7e-23 112.5 141 49.6
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.1e-22 110.9 125 56.0
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 1.4e-22 110.5 128 54.7
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 2.4e-22 109.8 74 81.1
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 4.1e-22 109.0 100 64.0
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.2e-21 107.5 120 53.3
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 1.5e-21 107.1 89 69.7
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 2.6e-21 106.3 118 53.4
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 3.4e-21 105.9 117 54.7
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 4.5e-21 105.5 129 50.4
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 4.5e-21 105.5 124 54.8
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 5.9e-21 105.1 90 66.7
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 5.9e-21 105.1 177 40.7
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 7.7e-21 104.8 117 52.1
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 2.9e-20 102.8 97 59.8
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 3.2e-19 99.4 144 45.8
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 9.4e-19 97.8 115 51.3
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 2.1e-18 96.7 131 49.6
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 4.6e-18 95.5 49 93.9
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 1.8e-17 93.6 134 44.0
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 3.9e-17 92.4 133 48.1
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.1e-16 90.9 150 42.0
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 2.0e-16 90.1 79 65.8
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.0e-16 90.1 75 68.0
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.5e-16 89.7 127 45.7
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 9.7e-16 87.8 48 93.8
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 9.7e-16 87.8 48 93.8
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.3e-15 87.4 108 53.7
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.7e-15 87.0 100 51.0
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 1.7e-15 87.0 75 64.0
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 2.2e-15 86.7 92 54.3
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 4.8e-15 85.5 117 47.0
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.4e-14 84.0 71 62.0
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 5.3e-14 82.0 196 35.2
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.0e-13 80.1 48 81.2
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 4.5e-13 79.0 114 48.2
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 7.7e-13 78.2 82 54.9
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.0e-12 77.8 48 79.2
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.9e-11 73.6 48 75.0
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 2.5e-11 73.2 103 46.6
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 9.4e-11 71.2 92 45.7
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 9.4e-11 71.2 97 41.2
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.6e-10 70.5 147 34.0
A02p31010 Brassica napus HOM05D005250 ORTHO05D096592 2.7e-10 69.7 38 92.1
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 4.7e-10 68.9 101 41.6
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 9.7e-08 61.2 67 53.7
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.1e-06 57.8 89 38.2
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 4.1e-06 55.8 63 52.4


User provided reference genes

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