Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p23290 Brassica napus HOM05D003513 ORTHO05D013524 1.6e-28 128.6 63 100.0
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 9.0e-27 122.9 63 95.2
C06p18700 Brassica napus HOM05D003513 ORTHO05D013524 9.0e-27 122.9 63 95.2
A03p63010 Brassica napus HOM05D003513 ORTHO05D013524 3.4e-26 120.9 62 93.5
C07p28040 Brassica napus HOM05D003513 ORTHO05D013524 3.4e-26 120.9 62 93.5
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 4.5e-26 120.6 63 93.7
BraA09t39125Z Brassica rapa HOM05D003513 ORTHO05D013524 5.8e-26 120.2 63 92.1
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 3.8e-25 117.5 63 90.5
BraA04t16944Z Brassica rapa HOM05D003513 ORTHO05D013524 3.8e-25 117.5 63 90.5
A08p23090 Brassica napus HOM05D003513 ORTHO05D013524 1.1e-24 115.9 63 88.9
A06p18750 Brassica napus HOM05D003513 ORTHO05D013524 2.5e-24 114.8 61 91.8
BcaC01g02384 Brassica carinata HOM05D000163 ORTHO05D000962 4.2e-16 87.4 45 91.1
A06p28030 Brassica napus HOM05D000163 ORTHO05D000962 4.2e-16 87.4 45 91.1
C03p65850 Brassica napus HOM05D000163 ORTHO05D000962 4.2e-16 87.4 45 91.1
BolC3t18843H Brassica oleracea HOM05D000163 ORTHO05D000962 4.2e-16 87.4 45 91.1
BraA06t25744Z Brassica rapa HOM05D000163 ORTHO05D000962 4.2e-16 87.4 45 91.1
Thhalv10010130m.g Eutrema salsugineum HOM05D000163 ORTHO05D000962 4.2e-16 87.4 45 91.1
A06p18690 Brassica napus HOM05D000163 ORTHO05D000962 9.3e-16 86.3 45 88.9
Sp5g13010 Schrenkiella parvula HOM05D000163 ORTHO05D000962 2.1e-15 85.1 45 86.7
BcaB02g09575 Brassica carinata HOM05D000163 ORTHO05D000962 2.7e-15 84.7 45 84.4
BraA06t24951Z Brassica rapa HOM05D000163 ORTHO05D000962 3.6e-15 84.3 45 86.7
BcaB01g00754 Brassica carinata HOM05D000163 ORTHO05D000962 6.1e-15 83.6 45 86.7
BcaC07g39381 Brassica carinata HOM05D000163 ORTHO05D000962 6.1e-15 83.6 45 86.7
C08p24040 Brassica napus HOM05D000163 ORTHO05D000962 6.1e-15 83.6 45 86.7
BolC8t50026H Brassica oleracea HOM05D000163 ORTHO05D000962 6.1e-15 83.6 45 86.7
CARHR157900 Cardamine hirsuta HOM05D003513 ORTHO05D013524 7.9e-15 83.2 48 83.3
Aa31LG4G17540 Aethionema arabicum HOM05D000163 ORTHO05D000962 3.0e-14 81.3 52 71.2
AL5G28580 Arabidopsis lyrata HOM05D000163 ORTHO05D000962 3.0e-14 81.3 52 76.9
AT3G49060 Arabidopsis thaliana HOM05D000163 ORTHO05D000962 3.0e-14 81.3 52 76.9
THA.LOC104798933 Tarenaya hassleriana HOM05D000163 ORTHO05D000962 3.0e-14 81.3 51 72.5
Carub.0005s1526 Capsella rubella HOM05D000163 ORTHO05D000962 6.7e-14 80.1 45 84.4
Prupe.2G297400 Prunus persica HOM05D000163 ORTHO05D000962 1.7e-09 65.5 48 56.2
MD01G1205000 Malus domestica HOM05D000163 ORTHO05D000962 5.5e-08 60.5 50 48.0
Manes.05G033800 Manihot esculenta HOM05D000163 ORTHO05D000962 5.5e-08 60.5 45 51.1
RcHm_v2.0_Chr1g0377811 Rosa chinensis HOM05D000163 ORTHO05D000962 7.2e-08 60.1 49 51.0
Atru.chr1.422 Acer truncatum HOM05D000163 ORTHO05D000962 1.2e-07 59.3 47 51.1
Cpa.g.sc107.75 Carica papaya HOM05D000163 ORTHO05D000962 2.1e-07 58.5 51 49.0
COL.COLO4_28045 Corchorus olitorius HOM05D000163 ORTHO05D000962 3.6e-07 57.8 40 57.5
Cfa016261 Carpinus fangiana HOM05D000163 ORTHO05D000962 4.6e-07 57.4 50 52.0
Actinidia34132 Actinidia chinensis HOM05D000163 ORTHO05D000962 7.9e-07 56.6 45 53.3
CiPaw.06G002200 Carya illinoinensis HOM05D000163 ORTHO05D000962 7.9e-07 56.6 40 57.5
Potri.012G143100 Populus trichocarpa HOM05D000163 ORTHO05D000962 7.9e-07 56.6 45 51.1
Duzib084G0524 Durio zibethinus HOM05D000163 ORTHO05D000962 1.0e-06 56.2 49 49.0
Gohir.A12G256100 Gossypium hirsutum HOM05D000163 ORTHO05D000962 1.0e-06 56.2 50 50.0
Hma1.2p1_2503F.1_g323410 Hydrangea macrophylla HOM05D000163 ORTHO05D000962 1.0e-06 56.2 42 57.1
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 1.4e-06 55.8 45 51.1
Ciclev10006472m.g Citrus clementina HOM05D000163 ORTHO05D000962 1.4e-06 55.8 40 57.5
Potri.002G160300 Populus trichocarpa HOM05D000163 ORTHO05D000962 1.4e-06 55.8 42 54.8
Thecc.03G179900 Theobroma cacao HOM05D000163 ORTHO05D000962 1.4e-06 55.8 51 45.1
GSVIVG01028909001 Vitis vinifera HOM05D000163 ORTHO05D000962 1.4e-06 55.8 51 49.0
C08p23070 Brassica napus HOM05D019610 ORTHO05D013524 1.8e-06 55.5 35 71.4
Dinv28415 Davidia involucrata HOM05D000163 ORTHO05D000962 1.8e-06 55.5 41 56.1
CSS0047795 Camellia sinensis var. sinensis HOM05D000163 ORTHO05D000962 3.9e-06 54.3 38 60.5
CiPaw.01G062000 Carya illinoinensis HOM05D000163 ORTHO05D000962 3.9e-06 54.3 42 50.0
Duzib205G0156 Durio zibethinus HOM05D000163 ORTHO05D000962 3.9e-06 54.3 48 45.8
Gohir.D12G257500 Gossypium hirsutum HOM05D000163 ORTHO05D000962 3.9e-06 54.3 50 48.0
vmacro06656 Vaccinium macrocarpon HOM05D000163 ORTHO05D000962 3.9e-06 54.3 40 55.0
Ah.05g180570 Amaranthus hybridus HOM05D000163 ORTHO05D000962 5.1e-06 53.9 42 52.4
Cpa.g.sc11.7 Carica papaya HOM05D000163 ORTHO05D000962 5.1e-06 53.9 42 50.0
Gorai.008G275700 Gossypium raimondii HOM05D000163 ORTHO05D000962 6.7e-06 53.5 39 59.0
Cc02_g02710 Coffea canephora HOM05D000163 ORTHO05D000962 8.8e-06 53.1 51 45.1
THA.LOC104825841 Tarenaya hassleriana HOM05D000163 ORTHO05D000962 8.8e-06 53.1 39 53.8


User provided reference genes

Program Settings