Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p20760 Brassica napus HOM05D011510 ORTHO05D016774 4.1e-86 321.2 149 100.0
A05p26410 Brassica napus HOM05D011510 ORTHO05D016774 1.2e-85 319.7 149 99.3
BraA05t20984Z Brassica rapa HOM05D011510 ORTHO05D016774 2.5e-83 312.0 162 92.0
C04p25000 Brassica napus HOM05D011510 ORTHO05D016774 3.0e-73 278.5 162 82.7
BolC4t24000H Brassica oleracea HOM05D011510 ORTHO05D016774 3.0e-73 278.5 162 82.7
BcaC02g10801 Brassica carinata HOM05D011510 ORTHO05D016774 3.7e-71 271.6 158 82.9
C05p08960 Brassica napus HOM05D011510 ORTHO05D016774 8.3e-71 270.4 130 94.6
BcaC01g06806 Brassica carinata HOM05D011510 ORTHO05D016774 3.1e-70 268.5 130 94.6
C02p31390 Brassica napus HOM05D011510 ORTHO05D016774 4.5e-69 264.6 130 93.1
A09p35880 Brassica napus HOM05D011510 ORTHO05D016774 2.3e-68 262.3 149 85.2
BcaC05g24854 Brassica carinata HOM05D011510 ORTHO05D006458 1.2e-61 240.0 130 87.7
A09p26280 Brassica napus HOM05D011510 ORTHO05D006458 1.9e-46 189.5 90 100.0
BcaC02g09653 Brassica carinata HOM05D005546 ORTHO05D006458 7.3e-35 151.0 113 70.8
C04p45180 Brassica napus HOM05D005546 ORTHO05D006458 9.5e-35 150.6 91 83.5
BolC4t26099H Brassica oleracea HOM05D011510 ORTHO05D006458 9.5e-35 150.6 91 83.5
BcaC07g41604 Brassica carinata HOM05D011510 ORTHO05D095391 4.8e-18 95.1 40 100.0
BcaC08g45133 Brassica carinata HOM05D011510 ORTHO05D096365 4.0e-17 92.0 105 52.4
C09p33130 Brassica napus HOM05D011510 ORTHO05D006458 6.4e-15 84.7 46 91.3
A03p05280 Brassica napus HOM05D001513 ORTHO05D001494 1.8e-12 76.6 48 79.2
C03p06070 Brassica napus HOM05D001513 ORTHO05D001494 1.8e-12 76.6 48 79.2
BolC3t13117H Brassica oleracea HOM05D001513 ORTHO05D001494 1.8e-12 76.6 48 79.2
BraA03t09867Z Brassica rapa HOM05D001513 ORTHO05D001494 1.8e-12 76.6 48 79.2
AL6G22670 Arabidopsis lyrata HOM05D001513 ORTHO05D001494 3.0e-12 75.9 48 77.1
Sp6g31690 Schrenkiella parvula HOM05D001513 ORTHO05D001494 5.1e-12 75.1 48 75.0
BolC9t59322H Brassica oleracea HOM05D001513 ORTHO05D001494 6.7e-12 74.7 48 75.0
C09p64920 Brassica napus HOM05D001513 ORTHO05D001494 8.7e-12 74.3 52 71.2
CARHR201250 Cardamine hirsuta HOM05D001513 ORTHO05D001494 8.7e-12 74.3 48 75.0
AT5G11910 Arabidopsis thaliana HOM05D001513 ORTHO05D001494 2.5e-11 72.8 48 75.0
A10p25850 Brassica napus HOM05D001513 ORTHO05D001494 2.5e-11 72.8 50 74.0
BcaB01g05441 Brassica carinata HOM05D001513 ORTHO05D001494 9.6e-11 70.9 48 75.0
BraA10t44648Z Brassica rapa HOM05D001513 ORTHO05D001494 1.3e-10 70.5 48 72.9
Thhalv10014553m.g Eutrema salsugineum HOM05D001513 ORTHO05D001494 3.7e-10 68.9 40 80.0
Haze_18172 Corylus avellana HOM05D001513 ORTHO05D001494 1.1e-09 67.4 53 58.5
Carub.0006s1044 Capsella rubella HOM05D001513 ORTHO05D001494 2.4e-09 66.2 48 70.8
Atru.chr7.1091 Acer truncatum HOM05D001513 ORTHO05D001494 2.6e-08 62.8 51 56.9
QL02p001067 Quercus lobata HOM05D001513 ORTHO05D001494 3.4e-08 62.4 53 52.8
THA.LOC104824638 Tarenaya hassleriana HOM05D001513 ORTHO05D001494 4.5e-08 62.0 48 66.7
Duzib150G0373 Durio zibethinus HOM05D001513 ORTHO05D001494 5.8e-08 61.6 39 71.8
ClCG05G017900 Citrullus lanatus HOM05D000181 ORTHO05D004115 7.6e-08 61.2 53 54.7
CiPaw.15G038000 Carya illinoinensis HOM05D001513 ORTHO05D001494 9.9e-08 60.8 53 52.8
Thecc.09G055100 Theobroma cacao HOM05D001513 ORTHO05D001494 9.9e-08 60.8 65 46.2
Manes.03G048900 Manihot esculenta HOM05D001513 ORTHO05D001494 1.3e-07 60.5 53 52.8
Cfa017965 Carpinus fangiana HOM05D000181 ORTHO05D004115 2.2e-07 59.7 62 50.0
Glyma.13G105300 Glycine max HOM05D001513 ORTHO05D001494 2.2e-07 59.7 48 62.5
Potri.006G227900 Populus trichocarpa HOM05D001513 ORTHO05D001494 2.2e-07 59.7 39 69.2
Ca_02169_v3 Cicer arietinum L. HOM05D001513 ORTHO05D001494 2.9e-07 59.3 50 60.0
Hma1.2p1_0055F.1_g031410 Hydrangea macrophylla HOM05D001513 ORTHO05D001494 2.9e-07 59.3 51 54.9
Phvul.003G135800 Phaseolus vulgaris HOM05D001513 ORTHO05D001494 2.9e-07 59.3 48 60.4
Psat1g140520 Pisum sativum HOM05D001513 ORTHO05D001494 2.9e-07 59.3 50 60.0
vmacro17247 Vaccinium macrocarpon HOM05D001513 ORTHO05D001494 2.9e-07 59.3 71 43.7
CANSAT25G3108 Cannabis sativa HOM05D001513 ORTHO05D001494 3.8e-07 58.9 53 54.7
Dinv27995 Davidia involucrata HOM05D001513 ORTHO05D001494 3.8e-07 58.9 48 62.5
Medtr2g039510 Medicago truncatula HOM05D001513 ORTHO05D001494 3.8e-07 58.9 50 58.0
MBI01_g01256_MAGBIO Magnolia biondii HOM05D001513 ORTHO05D001494 4.9e-07 58.5 48 58.3
Oeu039604.2 Olea europaea HOM05D001513 ORTHO05D001494 4.9e-07 58.5 53 52.8
Aa31LG8G13050 Aethionema arabicum HOM05D001513 ORTHO05D001494 6.4e-07 58.2 39 69.2
Cfa003071 Carpinus fangiana HOM05D001513 ORTHO05D001494 8.4e-07 57.8 52 50.0
Gorai.011G199500 Gossypium raimondii HOM05D001513 ORTHO05D001494 8.4e-07 57.8 53 50.9
Lj4g0002328 Lotus japonicus HOM05D001513 ORTHO05D001494 8.4e-07 57.8 54 48.1
Lj6g0001116 Lotus japonicus HOM05D001513 ORTHO05D001494 8.4e-07 57.8 50 58.0
Sed0015248 Sechium edule HOM05D001513 ORTHO05D001494 8.4e-07 57.8 55 52.7
TWI34G0577 Tripterygium wilfordii HOM05D001513 ORTHO05D001494 8.4e-07 57.8 53 52.8
unitig_8.g3525 Utricularia gibba HOM05D001513 ORTHO05D001494 8.4e-07 57.8 50 54.0
Gorai.009G044400 Gossypium raimondii HOM05D001513 ORTHO05D001494 1.1e-06 57.4 53 49.1
Actinidia14720 Actinidia chinensis HOM05D001513 ORTHO05D001494 1.4e-06 57.0 39 66.7
MELO3C016874.2 Cucumis melo HOM05D001513 ORTHO05D001494 1.4e-06 57.0 55 52.7
Phvul.003G135900 Phaseolus vulgaris HOM05D001513 ORTHO05D001494 1.4e-06 57.0 48 56.2
Atru.chr7.1610 Acer truncatum HOM05D001513 ORTHO05D001494 1.9e-06 56.6 48 60.4
ECA234G3678 Erigeron canadensis HOM05D001513 ORTHO05D001494 1.9e-06 56.6 48 56.2
Lsat_1_v5_gn_5_142901 Lactuca sativa HOM05D001513 ORTHO05D001494 1.9e-06 56.6 53 49.1
Rhsim05G0018700 Rhododendron simsii HOM05D001513 ORTHO05D001494 1.9e-06 56.6 48 56.2
Solyc07g039530.1 Solanum lycopersicum HOM05D001513 ORTHO05D001494 1.9e-06 56.6 52 50.0
VMungo1215G2849 Vigna mungo HOM05D001513 ORTHO05D001494 1.9e-06 56.6 48 56.2
BcaC01g02285 Brassica carinata HOM05D001513 ORTHO05D001494 2.4e-06 56.2 48 54.2
C03p67040 Brassica napus HOM05D001513 ORTHO05D001494 2.4e-06 56.2 48 54.2
BolC3t18978H Brassica oleracea HOM05D001513 ORTHO05D001494 2.4e-06 56.2 48 54.2
CSS0012680 Camellia sinensis var. sinensis HOM05D001513 ORTHO05D001494 2.4e-06 56.2 39 66.7
Migut.L01499 Erythranthe guttata HOM05D001513 ORTHO05D001494 2.4e-06 56.2 55 45.5
Gorai.008G274300 Gossypium raimondii HOM05D001513 ORTHO05D001494 2.4e-06 56.2 53 49.1
vmacro14254 Vaccinium macrocarpon HOM05D001513 ORTHO05D001494 2.4e-06 56.2 39 66.7
GSVIVG01035393001 Vitis vinifera HOM05D000181 ORTHO05D004115 2.4e-06 56.2 39 64.1
arahy.Tifrunner.gnm1.ann1.84EG73 Arachis hypogaea HOM05D001513 ORTHO05D001494 3.2e-06 55.8 51 51.0
Gohir.D05G043300 Gossypium hirsutum HOM05D001513 ORTHO05D001494 3.2e-06 55.8 53 49.1
arahy.Tifrunner.gnm1.ann1.MK4DX9 Arachis hypogaea HOM05D001513 ORTHO05D001494 4.2e-06 55.5 51 51.0
MSTRG.19507 Avicennia marina HOM05D001513 ORTHO05D001494 4.2e-06 55.5 53 45.3
Cc06_g11500 Coffea canephora HOM05D001513 ORTHO05D001494 4.2e-06 55.5 53 49.1
COL.COLO4_18191 Corchorus olitorius HOM05D001513 ORTHO05D001494 4.2e-06 55.5 48 52.1
Glyma.17G054200 Glycine max HOM05D001513 ORTHO05D001494 4.2e-06 55.5 48 56.2
Gohir.A05G041600 Gossypium hirsutum HOM05D001513 ORTHO05D001494 4.2e-06 55.5 53 49.1
Gohir.A06G073200 Gossypium hirsutum HOM05D001513 ORTHO05D001494 4.2e-06 55.5 53 49.1
Gohir.D06G071700 Gossypium hirsutum HOM05D001513 ORTHO05D001494 4.2e-06 55.5 53 49.1
arahy.Tifrunner.gnm1.ann1.JE0YWU Arachis hypogaea HOM05D001513 ORTHO05D001494 5.5e-06 55.1 48 56.2
COL.COLO4_21072 Corchorus olitorius HOM05D001513 ORTHO05D001494 5.5e-06 55.1 65 44.6
FAN19G1837 Fragaria x ananassa HOM05D001513 ORTHO05D001494 5.5e-06 55.1 53 50.9
Nitab4.5_0002829g0070 Nicotiana tabacum HOM05D001513 ORTHO05D001494 5.5e-06 55.1 61 44.3
PGR142G4218 Punica granatum HOM05D001513 ORTHO05D001494 5.5e-06 55.1 53 49.1
Rhsim07G0142000 Rhododendron simsii HOM05D001513 ORTHO05D001494 5.5e-06 55.1 39 66.7
SalBow1G2127 Salvia bowleyana HOM05D001513 ORTHO05D001494 5.5e-06 55.1 48 54.2
Solyc07g039510.4 Solanum lycopersicum HOM05D001513 ORTHO05D001494 5.5e-06 55.1 51 49.0
Sopen07g019090 Solanum pennellii HOM05D001513 ORTHO05D001494 5.5e-06 55.1 51 49.0
TPR.G12991 Trifolium pratense HOM05D001513 ORTHO05D001494 5.5e-06 55.1 53 52.8
Cfa003073 Carpinus fangiana HOM05D001513 ORTHO05D001494 7.1e-06 54.7 53 47.2
CiPaw.04G148600 Carya illinoinensis HOM05D001513 ORTHO05D001494 7.1e-06 54.7 50 56.0
CsaV3_4G035670 Cucumis sativus L. HOM05D000181 ORTHO05D004115 7.1e-06 54.7 55 50.9
ECA240G0943 Erigeron canadensis HOM05D001513 ORTHO05D001494 7.1e-06 54.7 48 62.5
Lj7A677G53 Lonicera japonica HOM05D001513 ORTHO05D001494 7.1e-06 54.7 57 47.4
QL02p062398 Quercus lobata HOM05D001513 ORTHO05D001494 7.1e-06 54.7 53 49.1
Ah.10g034270 Amaranthus hybridus HOM05D001513 ORTHO05D001494 9.3e-06 54.3 48 58.3
MSTRG.10554 Avicennia marina HOM05D001513 ORTHO05D001494 9.3e-06 54.3 48 52.1
Glyma.09G064000 Glycine max HOM05D001513 ORTHO05D001494 9.3e-06 54.3 48 52.1
Lalb_Chr13g0299681 Lupinus albus HOM05D001513 ORTHO05D001494 9.3e-06 54.3 48 52.1
Nitab4.5_0010634g0040 Nicotiana tabacum HOM05D001513 ORTHO05D001494 9.3e-06 54.3 51 49.0
TWI32G1273 Tripterygium wilfordii HOM05D001513 ORTHO05D001494 9.3e-06 54.3 48 54.2


User provided reference genes

Program Settings