Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p19690 Brassica napus HOM05D004203 ORTHO05D004830 2.8e-38 161.4 77 100.0
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-21 105.9 51 98.0
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 8.5e-19 96.7 51 90.2
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 8.5e-19 96.7 51 90.2
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 8.5e-19 96.7 51 90.2
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 8.5e-19 96.7 51 90.2
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-18 96.3 51 88.2
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 1.9e-18 95.5 51 88.2
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 4.2e-18 94.4 52 86.5
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 6.7e-16 87.0 51 86.3
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-15 85.9 51 80.4
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 7.4e-15 83.6 49 83.7
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 4.8e-14 80.9 51 82.4
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 4.8e-14 80.9 51 76.5
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 4.8e-14 80.9 51 80.4
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 6.3e-14 80.5 51 82.4
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 1.1e-13 79.7 51 78.4
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 1.4e-13 79.3 51 80.4
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 2.4e-13 78.6 51 76.5
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 3.1e-13 78.2 51 74.5
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 9.1e-13 76.6 51 76.5
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 9.1e-13 76.6 51 76.5
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 9.1e-13 76.6 51 76.5
C06p51380 Brassica napus HOM05D004203 ORTHO05D004830 1.5e-12 75.9 38 94.7
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 1.0e-11 73.2 51 68.6
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 2.5e-10 68.6 52 73.1
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 3.2e-10 68.2 51 72.5
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 7.2e-10 67.0 51 64.7
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 7.2e-10 67.0 51 64.7
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 7.2e-10 67.0 51 60.8
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 7.2e-10 67.0 51 70.6
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 9.4e-10 66.6 51 70.6
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 1.6e-09 65.9 55 61.8
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 1.0e-08 63.2 51 58.8
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 1.0e-08 63.2 62 56.5
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.8e-08 62.4 51 62.7
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 1.8e-08 62.4 51 62.7
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 1.8e-08 62.4 51 62.7
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.3e-08 62.0 51 60.8
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 3.0e-08 61.6 51 56.9
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 3.9e-08 61.2 50 62.0
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 3.9e-08 61.2 51 58.8
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 5.1e-08 60.8 52 63.5
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 5.1e-08 60.8 51 60.8
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 5.1e-08 60.8 51 60.8
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 5.1e-08 60.8 51 54.9
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 5.1e-08 60.8 51 62.7
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 5.1e-08 60.8 51 62.7
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 5.1e-08 60.8 51 56.9
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 5.1e-08 60.8 51 60.8
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 5.1e-08 60.8 51 58.8
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 6.7e-08 60.5 51 62.7
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 8.8e-08 60.1 51 60.8
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 8.8e-08 60.1 51 54.9
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 1.1e-07 59.7 51 62.7
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 2.0e-07 58.9 51 58.8
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 2.6e-07 58.5 51 60.8
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 2.6e-07 58.5 51 54.9
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 2.6e-07 58.5 55 58.2
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 2.6e-07 58.5 51 56.9
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 3.3e-07 58.2 51 54.9
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 3.3e-07 58.2 52 59.6
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 4.4e-07 57.8 51 54.9
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 5.7e-07 57.4 26 96.2
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.7e-07 57.4 67 50.7
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 5.7e-07 57.4 51 56.9
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 5.7e-07 57.4 51 56.9
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 5.7e-07 57.4 52 57.7
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 5.7e-07 57.4 52 57.7
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 5.7e-07 57.4 51 56.9
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 7.4e-07 57.0 51 56.9
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 7.4e-07 57.0 51 56.9
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 7.4e-07 57.0 51 54.9
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 7.4e-07 57.0 51 60.8
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 9.7e-07 56.6 33 78.8
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 9.7e-07 56.6 53 54.7
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 9.7e-07 56.6 52 57.7
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 9.7e-07 56.6 51 56.9
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 1.3e-06 56.2 51 54.9
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 1.3e-06 56.2 51 56.9
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.3e-06 56.2 51 52.9
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.3e-06 56.2 51 54.9
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 1.7e-06 55.8 51 54.9
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.7e-06 55.8 26 92.3
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.7e-06 55.8 26 92.3
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 1.7e-06 55.8 51 56.9
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 2.2e-06 55.5 56 55.4
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 2.2e-06 55.5 25 96.0
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 2.2e-06 55.5 25 96.0
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 2.2e-06 55.5 25 96.0
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 2.8e-06 55.1 51 60.8
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.8e-06 55.1 52 57.7
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 2.8e-06 55.1 50 54.0
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 2.8e-06 55.1 51 56.9
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 3.7e-06 54.7 52 53.8
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 3.7e-06 54.7 52 53.8
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 4.8e-06 54.3 51 56.9
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 6.3e-06 53.9 26 88.5
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 6.3e-06 53.9 26 88.5
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 6.3e-06 53.9 51 54.9
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 8.2e-06 53.5 36 75.0
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 8.2e-06 53.5 36 75.0
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 8.2e-06 53.5 53 49.1


User provided reference genes

Program Settings