Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 1.4e-268 929.1 489 100.0
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 8.9e-247 856.7 489 93.3
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 6.5e-157 558.1 491 69.5
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 4.2e-156 555.4 494 69.4
BcaC08g44222 Brassica carinata HOM05D012516 ORTHO05D003355 2.5e-108 396.7 239 87.9
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 4.5e-89 332.8 263 73.8
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 5.3e-74 282.7 270 63.3
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 1.4e-66 258.1 236 64.4
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 1.9e-60 237.7 269 53.9
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 1.1e-58 231.9 270 53.3
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 1.7e-56 224.6 264 51.5
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 5.9e-49 199.5 257 50.6
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 1.9e-39 167.9 282 43.6
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 3.6e-38 163.7 282 40.8
BcaB02g10793 Brassica carinata HOM05D012516 ORTHO05D031732 2.3e-37 161.0 136 74.3
Carub.0001s4446 Capsella rubella HOM05D012516 ORTHO05D031732 2.8e-27 127.5 139 59.0
CARHR045590 Cardamine hirsuta HOM05D012516 ORTHO05D031732 1.1e-23 115.5 139 54.7
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 2.1e-22 111.3 297 34.7
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 1.8e-21 108.2 308 31.5
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 1.5e-20 105.1 100 52.0
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 4.4e-20 103.6 118 47.5
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 5.7e-20 103.2 99 54.5
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.7e-19 101.7 98 52.0
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 8.3e-19 99.4 97 51.5
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 2.4e-18 97.8 115 48.7
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 4.1e-18 97.1 90 54.4
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 5.4e-18 96.7 173 37.6
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 7.0e-18 96.3 153 38.6
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 9.2e-18 95.9 287 29.3
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 2.0e-17 94.7 249 30.9
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 3.5e-17 94.0 160 38.1
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 3.5e-17 94.0 86 52.3
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 4.5e-17 93.6 121 44.6
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 7.8e-17 92.8 85 54.1
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 7.8e-17 92.8 101 51.5
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.0e-16 92.4 146 38.4
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 1.3e-16 92.0 177 35.0
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.7e-16 91.7 174 37.4
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 2.9e-16 90.9 254 29.1
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 2.9e-16 90.9 213 31.5
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 2.9e-16 90.9 120 40.8
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 5.0e-16 90.1 104 47.1
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 8.6e-16 89.4 86 51.2
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 1.1e-15 89.0 108 43.5
Psat1g149600 Pisum sativum HOM05D005863 ORTHO05D003355 1.1e-15 89.0 88 50.0
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 1.5e-15 88.6 94 47.9
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 1.5e-15 88.6 96 45.8
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 1.9e-15 88.2 96 45.8
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 2.5e-15 87.8 87 49.4
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 5.6e-15 86.7 228 30.3
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 5.6e-15 86.7 190 31.6
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 1.2e-14 85.5 96 45.8
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.2e-14 85.5 92 46.7
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 2.8e-14 84.3 111 42.3
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 2.8e-14 84.3 79 51.9
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 3.6e-14 84.0 96 45.8
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 3.6e-14 84.0 90 43.3
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 4.7e-14 83.6 99 43.4
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 4.7e-14 83.6 101 42.6
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 6.1e-14 83.2 86 43.0
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.3e-13 81.3 87 46.0
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 5.2e-13 80.1 120 39.2
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 5.2e-13 80.1 89 47.2
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 5.2e-13 80.1 74 48.6
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 8.9e-13 79.3 119 38.7
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 2.6e-12 77.8 118 38.1
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 3.4e-12 77.4 73 46.6
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 4.4e-12 77.0 140 37.1
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 4.4e-12 77.0 108 40.7
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 4.4e-12 77.0 88 43.2
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 3.7e-11 73.9 82 46.3
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 3.7e-11 73.9 93 39.8
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 3.7e-11 73.9 74 44.6
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 3.7e-11 73.9 101 40.6
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 4.9e-11 73.6 86 41.9
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 8.3e-11 72.8 134 34.3
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-10 72.4 221 29.4
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.1e-10 72.4 103 37.9
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.1e-10 72.4 123 33.3
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.1e-10 72.4 129 35.7
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.1e-10 72.4 108 37.0
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.4e-10 72.0 143 35.0
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 1.8e-10 71.6 121 35.5
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.8e-10 71.6 85 37.6
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 2.4e-10 71.2 93 39.8
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 2.4e-10 71.2 83 41.0
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 3.2e-10 70.9 85 38.8
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 3.2e-10 70.9 95 37.9
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 4.1e-10 70.5 135 32.6
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 4.1e-10 70.5 92 40.2
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 4.1e-10 70.5 114 37.7
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 5.4e-10 70.1 125 34.4
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 5.4e-10 70.1 100 37.0
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 5.4e-10 70.1 104 33.7
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 7.0e-10 69.7 129 34.1
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 7.0e-10 69.7 94 36.2
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 9.2e-10 69.3 151 30.5
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 9.2e-10 69.3 91 38.5
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 9.2e-10 69.3 90 40.0
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 9.2e-10 69.3 146 32.9
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.2e-09 68.9 85 43.5
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.6e-09 68.6 120 34.2
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 1.6e-09 68.6 94 35.1
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 2.0e-09 68.2 143 31.5
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 2.0e-09 68.2 85 34.1
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 2.0e-09 68.2 147 32.0
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 2.0e-09 68.2 87 39.1
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 2.0e-09 68.2 88 35.2
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 2.7e-09 67.8 83 39.8
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 3.5e-09 67.4 123 32.5
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 4.6e-09 67.0 85 32.9
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 7.8e-09 66.2 83 41.0
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 7.8e-09 66.2 120 34.2
FAN23G2175 Fragaria x ananassa HOM05D014719 ORTHO05D003355 7.8e-09 66.2 142 33.1
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 7.8e-09 66.2 84 36.9
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.0e-08 65.9 101 36.6
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 1.0e-08 65.9 106 32.1
Ca_02000_v3 Cicer arietinum L. HOM05D005863 ORTHO05D003355 1.3e-08 65.5 88 42.0
Duzib213G0291 Durio zibethinus HOM05D005863 ORTHO05D003355 1.3e-08 65.5 273 28.2
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.3e-08 65.5 83 37.3
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.7e-08 65.1 85 40.0
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 2.3e-08 64.7 82 34.1
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 3.0e-08 64.3 87 39.1
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.0e-08 64.3 84 36.9
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 3.0e-08 64.3 186 25.8
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 3.0e-08 64.3 83 33.7
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 3.9e-08 63.9 139 31.7
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 3.9e-08 63.9 90 35.6
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 3.9e-08 63.9 85 35.3
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 3.9e-08 63.9 88 36.4
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 3.9e-08 63.9 83 33.7
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 3.9e-08 63.9 97 32.0
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 5.0e-08 63.5 83 37.3
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 8.6e-08 62.8 160 30.0
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 8.6e-08 62.8 85 31.8
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.1e-07 62.4 95 34.7
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 1.1e-07 62.4 88 37.5
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.5e-07 62.0 236 25.4
ClCG09G021400 Citrullus lanatus HOM05D031146 ORTHO05D003355 2.5e-07 61.2 138 28.3
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 2.5e-07 61.2 86 37.2
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 2.5e-07 61.2 83 32.5
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 4.3e-07 60.5 88 34.1
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 7.3e-07 59.7 104 32.7
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 7.3e-07 59.7 87 31.0
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 9.5e-07 59.3 89 33.7
FAN19G1520 Fragaria x ananassa HOM05D014719 ORTHO05D003355 9.5e-07 59.3 120 34.2
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 9.5e-07 59.3 87 33.3
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 1.6e-06 58.5 83 31.3
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 1.6e-06 58.5 112 30.4
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 2.1e-06 58.2 84 33.3
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 2.1e-06 58.2 83 33.7
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 3.6e-06 57.4 127 29.9
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 6.2e-06 56.6 61 42.6
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 8.0e-06 56.2 83 32.5
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 8.0e-06 56.2 90 35.6
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 8.0e-06 56.2 83 32.5
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 8.0e-06 56.2 59 42.4
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 8.0e-06 56.2 99 32.3


User provided reference genes

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