Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 2.4e-134 482.3 259 100.0
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.2e-122 443.4 259 91.9
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 5.0e-116 421.4 275 84.0
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-115 419.9 275 83.6
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.5e-115 419.9 275 83.6
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 9.6e-91 337.4 278 71.2
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.6e-90 336.7 283 69.3
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.0e-84 317.4 280 64.6
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 4.6e-77 292.0 278 61.5
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.3e-76 289.7 262 64.1
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 2.1e-74 283.1 292 59.2
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-72 277.3 266 64.7
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.1e-57 227.6 302 49.7
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.2e-54 215.7 305 46.9
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.1e-53 213.4 334 44.6
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 6.1e-45 185.3 309 40.5
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.8e-44 183.7 309 40.5
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.3e-44 183.3 290 41.4
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.0e-44 183.0 290 41.4
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 5.1e-44 182.2 316 40.8
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 6.7e-44 181.8 323 39.6
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 2.2e-42 176.8 328 39.6
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.8e-41 173.7 326 38.3
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.4e-41 173.3 329 40.1
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 7.0e-41 171.8 329 39.5
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.0e-40 170.2 329 39.2
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.5e-40 169.5 329 39.2
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.0e-39 167.9 342 37.7
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 1.7e-39 167.2 310 37.4
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 2.9e-39 166.4 319 37.6
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 3.8e-39 166.0 351 36.5
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 3.8e-39 166.0 336 37.5
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.4e-38 164.1 331 36.0
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.5e-38 163.3 325 36.6
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 3.2e-38 162.9 296 39.2
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 3.2e-38 162.9 362 35.4
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 5.5e-38 162.2 333 35.4
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 9.4e-38 161.4 332 36.1
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.2e-37 161.0 345 36.8
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.7e-37 159.8 335 34.9
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 2.7e-37 159.8 327 35.8
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 4.7e-37 159.1 276 39.5
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.8e-36 157.1 333 35.4
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.8e-36 157.1 350 34.0
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.3e-36 156.8 331 35.0
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 3.9e-36 156.0 300 38.3
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 5.2e-36 155.6 348 36.2
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 6.7e-36 155.2 287 37.6
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 8.8e-36 154.8 340 34.4
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.1e-35 154.5 363 32.8
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 1.1e-35 154.5 363 32.8
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.1e-35 154.5 349 33.5
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 1.5e-35 154.1 362 33.7
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.0e-35 153.7 373 34.0
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 2.0e-35 153.7 368 31.8
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 2.6e-35 153.3 364 33.2
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.3e-35 152.9 372 33.3
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 4.4e-35 152.5 363 32.5
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 4.4e-35 152.5 337 33.8
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 7.4e-35 151.8 381 32.0
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.7e-35 151.4 245 41.2
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.7e-34 150.6 379 33.2
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.7e-34 150.6 327 34.9
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.7e-34 150.6 321 35.5
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 3.7e-34 149.4 266 40.2
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 8.2e-34 148.3 361 31.9
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.1e-33 147.9 367 32.7
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.4e-33 147.5 363 33.1
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.4e-33 147.5 336 32.4
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.1e-33 146.0 174 48.3
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.6e-32 143.3 293 37.2
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.5e-32 142.9 347 32.0
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 4.5e-32 142.5 172 50.0
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.9e-32 142.1 174 49.4
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.0e-31 141.4 295 36.3
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.0e-31 139.0 326 37.4
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 5.0e-31 139.0 367 32.4
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 6.5e-31 138.7 352 31.2
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 8.5e-31 138.3 327 33.9
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 2.5e-30 136.7 315 34.9
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 3.2e-30 136.3 391 29.4
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 4.2e-30 136.0 318 35.2
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 5.5e-30 135.6 359 32.3
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.6e-29 134.0 245 39.2
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.6e-29 134.0 158 51.3
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 4.7e-29 132.5 277 35.7
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 4.7e-29 132.5 121 60.3
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 8.0e-29 131.7 351 32.2
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.4e-28 131.0 327 33.0
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.4e-28 131.0 304 33.9
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.3e-28 130.2 260 36.2
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.3e-28 130.2 260 36.2
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.3e-28 130.2 283 34.6
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 3.0e-28 129.8 291 34.4
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 3.0e-28 129.8 397 28.2
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 4.0e-28 129.4 177 45.2
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 6.8e-28 128.6 283 34.3
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 8.8e-28 128.3 328 32.9
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.4e-27 125.9 318 31.8
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 5.7e-27 125.6 287 33.8
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 2.2e-26 123.6 296 33.8
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 2.8e-26 123.2 252 35.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.7e-26 122.9 267 33.0
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.7e-26 122.9 267 34.5
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 3.7e-26 122.9 395 29.6
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 4.8e-26 122.5 252 35.7
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.3e-26 122.1 283 36.4
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 8.3e-26 121.7 292 34.2
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 8.3e-26 121.7 327 34.3
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 4.1e-25 119.4 166 45.8
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 7.0e-25 118.6 198 45.5
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-24 117.9 116 56.9
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 2.7e-24 116.7 126 54.8
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 2.7e-24 116.7 126 54.8
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 3.5e-24 116.3 126 54.8
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 3.5e-24 116.3 210 40.0
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 5.9e-24 115.5 126 54.8
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 5.9e-24 115.5 126 54.8
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 7.7e-24 115.2 129 46.5
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.7e-23 114.0 132 53.0
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 5.0e-23 112.5 131 46.6
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.5e-23 112.1 112 56.2
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 6.5e-23 112.1 207 42.0
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 8.5e-23 111.7 116 52.6
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 8.5e-23 111.7 157 46.5
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.1e-22 111.3 313 31.3
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.5e-22 110.9 111 56.8
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.9e-22 110.5 170 45.3
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 2.5e-22 110.2 120 51.7
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.2e-21 107.8 170 42.4
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 3.6e-21 106.3 147 44.9
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.7e-21 105.9 164 42.7
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 8.0e-21 105.1 111 53.2
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 5.2e-20 102.4 270 32.6
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.2e-19 101.3 170 41.8
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.0e-19 100.5 177 38.4
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 3.4e-19 99.8 263 33.1
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 4.4e-19 99.4 161 41.0
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 7.5e-19 98.6 116 50.0
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 7.5e-19 98.6 116 50.0
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 2.2e-18 97.1 138 45.7
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 6.3e-18 95.5 277 31.4
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 6.3e-18 95.5 277 31.4
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 6.3e-18 95.5 277 31.4
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 6.3e-18 95.5 263 32.3
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 8.3e-18 95.1 98 59.2
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.4e-17 94.4 166 37.3
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 4.1e-17 92.8 112 42.9
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 3.5e-16 89.7 118 50.0
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 4.5e-16 89.4 114 47.4
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 7.7e-16 88.6 109 52.3
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.7e-15 87.4 109 39.4
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 2.3e-15 87.0 263 27.8
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 5.0e-15 85.9 183 32.8
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 4.2e-14 82.8 160 38.8
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 2.1e-13 80.5 94 51.1
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 6.1e-13 79.0 129 38.8
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.0e-12 78.2 115 48.7
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.0e-12 78.2 121 46.3
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.3e-12 77.0 77 62.3
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 2.3e-12 77.0 129 42.6
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 3.0e-12 76.6 121 45.5
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 4.0e-12 76.3 272 26.1
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 8.9e-12 75.1 64 50.0
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.2e-10 70.5 77 58.4
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 7.0e-09 65.5 228 27.2
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 2.7e-08 63.5 215 30.7
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.3e-07 61.2 289 27.3
SEGI_24660 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 7.3e-06 55.5 112 36.6


User provided reference genes

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