Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 0.0e+00 1184.1 622 100.0
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 0.0e+00 1165.6 622 98.2
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 1.9e-310 1068.5 638 91.4
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 1.5e-307 1058.9 662 88.1
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 5.3e-305 1050.4 626 91.2
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 5.4e-273 944.1 663 81.1
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 7.6e-243 844.0 677 70.9
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 6.3e-189 664.8 703 57.6
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 2.5e-185 652.9 709 56.6
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 1.6e-179 633.6 696 56.2
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 1.4e-175 620.5 682 54.7
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 2.6e-166 589.7 663 56.4
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 1.3e-162 577.4 579 57.7
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 4.6e-147 525.8 693 47.9
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 1.6e-112 411.0 672 41.2
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 2.1e-112 410.6 700 39.4
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 3.5e-107 393.3 715 38.7
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 2.8e-104 383.6 655 40.0
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 3.7e-104 383.3 678 39.5
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 1.7e-101 374.4 653 39.7
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 8.4e-101 372.1 689 38.2
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 1.4e-100 371.3 703 36.8
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 7.1e-100 369.0 640 39.2
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 6.0e-99 365.9 656 38.4
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 7.9e-99 365.5 657 38.7
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.3e-98 364.0 642 38.2
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 3.0e-98 363.6 639 38.8
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 8.7e-98 362.1 673 37.6
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 1.9e-97 360.9 642 38.0
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 3.3e-97 360.1 695 36.5
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 2.1e-96 357.5 699 36.5
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 1.4e-95 354.8 644 38.8
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 9.0e-95 352.1 659 37.2
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 1.0e-93 348.6 717 36.8
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 3.8e-93 346.7 705 36.7
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 6.5e-93 345.9 656 38.1
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 8.4e-93 345.5 671 35.8
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 1.2e-91 341.7 648 35.0
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 3.5e-91 340.1 683 36.7
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 1.0e-90 338.6 660 37.1
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 8.7e-90 335.5 663 37.4
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 2.8e-88 330.5 670 36.7
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 6.3e-88 329.3 654 36.2
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.8e-87 327.8 662 36.4
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 5.3e-87 326.2 685 35.0
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 2.0e-86 324.3 634 36.9
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.0e-85 322.0 715 35.1
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 3.6e-83 313.5 644 35.2
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 1.8e-82 311.2 690 33.6
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 2.3e-82 310.8 653 35.2
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 2.5e-81 307.4 622 36.2
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 9.7e-81 305.4 694 33.1
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 6.3e-80 302.8 447 42.3
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 9.1e-79 298.9 642 35.0
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 1.2e-78 298.5 658 35.7
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 2.6e-78 297.4 699 33.3
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 3.8e-77 293.5 601 35.1
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.4e-76 291.6 730 32.2
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.9e-76 291.2 694 33.0
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.1e-75 287.7 418 41.4
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 1.8e-74 284.6 720 32.4
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 2.0e-73 281.2 642 32.7
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 2.6e-73 280.8 684 33.3
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 2.6e-73 280.8 684 33.3
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 4.4e-73 280.0 703 32.3
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 1.8e-71 274.6 656 32.2
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 4.1e-71 273.5 698 32.1
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 9.1e-71 272.3 694 32.4
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 2.6e-70 270.8 671 31.9
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.6e-70 270.8 451 40.6
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 2.2e-69 267.7 660 32.3
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 6.5e-69 266.2 713 31.0
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 3.2e-68 263.8 519 35.6
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 5.5e-68 263.1 712 30.9
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 7.2e-68 262.7 519 35.6
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 1.6e-67 261.5 692 32.7
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 3.9e-66 256.9 582 34.4
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 1.1e-65 255.4 600 33.8
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 4.8e-64 250.0 591 34.5
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 5.3e-63 246.5 430 38.4
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 5.9e-62 243.0 542 33.8
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.1e-60 238.8 658 29.6
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 2.7e-59 234.2 710 29.7
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 3.6e-59 233.8 633 31.0
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 6.1e-59 233.0 638 30.7
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 5.2e-58 229.9 643 30.5
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 6.7e-58 229.6 627 30.8
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.0e-57 228.0 556 33.6
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 4.4e-57 226.9 647 28.3
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 1.8e-55 221.5 684 29.7
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 4.1e-55 220.3 642 30.4
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 1.5e-52 211.8 632 28.5
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 7.2e-52 209.5 711 29.3
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 7.2e-52 209.5 518 31.7
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 2.0e-49 201.4 422 37.7
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 4.4e-49 200.3 290 44.5
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 7.5e-49 199.5 639 28.3
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 1.4e-42 178.7 606 29.7
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 5.2e-42 176.8 311 41.5
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 2.8e-35 154.5 287 36.9
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 4.7e-35 153.7 503 31.0
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 1.4e-34 152.1 328 35.7
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 2.0e-33 148.3 310 36.1
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 9.8e-33 146.0 615 27.2
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 6.4e-32 143.3 650 25.4
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.5e-28 132.1 319 32.3
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 1.5e-28 132.1 576 25.0
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 1.8e-26 125.2 435 26.4
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 1.7e-21 108.6 400 27.5
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 8.3e-16 89.7 332 27.1
BcaC07g39321 Brassica carinata HOM05D006730 ORTHO05D008189 1.1e-12 79.3 69 65.2
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 4.3e-12 77.4 108 44.4
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 9.5e-12 76.3 93 46.2
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 2.8e-11 74.7 91 41.8
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 3.6e-11 74.3 153 33.3
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 8.4e-08 63.2 627 19.9


User provided reference genes

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