Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 2.9e-196 688.3 344 100.0
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 5.2e-185 651.0 344 95.9
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 1.3e-148 530.0 368 77.2
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 9.3e-134 480.7 351 73.8
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 2.4e-129 466.1 361 70.4
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 5.3e-129 464.9 345 73.0
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 8.4e-127 457.6 374 67.9
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 5.1e-124 448.4 365 70.1
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 2.6e-120 436.0 357 68.3
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 6.1e-117 424.9 386 65.3
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.5e-104 383.6 313 69.6
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 9.1e-89 331.3 173 90.2
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 2.7e-88 329.7 173 91.3
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 4.7e-85 318.9 173 89.6
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 8.3e-82 308.1 173 85.5
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 5.9e-80 302.0 174 85.1
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 2.2e-79 300.1 173 83.2
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 3.6e-77 292.7 173 80.9
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 2.8e-74 283.1 173 79.2
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 1.3e-66 257.7 173 67.1
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 2.9e-66 256.5 171 70.2
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 2.9e-66 256.5 159 73.6
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 6.4e-66 255.4 166 71.7
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 8.3e-66 255.0 177 66.1
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 1.4e-65 254.2 166 71.1
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.2e-64 251.1 164 70.7
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 1.6e-64 250.8 168 68.5
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 2.7e-64 250.0 164 70.1
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 3.5e-64 249.6 164 69.5
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 3.5e-64 249.6 165 70.3
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 4.6e-64 249.2 168 67.9
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 7.8e-64 248.4 166 69.3
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 7.8e-64 248.4 163 70.6
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 7.8e-64 248.4 164 69.5
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 3.0e-63 246.5 175 67.4
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 3.0e-63 246.5 164 69.5
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 5.0e-63 245.7 167 68.3
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 5.0e-63 245.7 170 67.1
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 6.6e-63 245.4 163 69.9
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 6.6e-63 245.4 163 69.9
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.1e-62 244.6 205 56.6
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 1.5e-62 244.2 177 63.8
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 3.3e-62 243.0 161 69.6
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 4.3e-62 242.7 175 65.7
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 5.6e-62 242.3 177 65.0
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 7.3e-62 241.9 160 70.0
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 7.3e-62 241.9 169 64.5
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 7.3e-62 241.9 173 64.2
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 7.3e-62 241.9 170 66.5
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 7.3e-62 241.9 169 68.0
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 7.3e-62 241.9 162 67.9
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 1.2e-61 241.1 164 68.3
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 4.7e-61 239.2 171 64.9
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 8.0e-61 238.4 168 67.3
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 8.0e-61 238.4 163 68.1
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 8.0e-61 238.4 175 62.9
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 8.0e-61 238.4 168 65.5
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 1.4e-60 237.7 166 69.9
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 1.4e-60 237.7 158 69.6
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.8e-60 237.3 166 66.3
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.8e-60 237.3 163 68.1
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 2.3e-60 236.9 166 66.3
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 2.3e-60 236.9 163 67.5
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 5.2e-60 235.7 169 66.3
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 5.2e-60 235.7 169 63.9
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 6.8e-60 235.3 168 64.3
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 6.8e-60 235.3 170 64.7
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 8.9e-60 235.0 163 67.5
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.5e-59 234.2 180 63.3
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 2.0e-59 233.8 172 60.5
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 3.4e-59 233.0 170 62.9
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 4.4e-59 232.6 164 62.8
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 4.4e-59 232.6 174 60.9
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 5.8e-59 232.3 171 66.7
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 7.5e-59 231.9 167 65.9
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 9.8e-59 231.5 173 61.3
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 1.3e-58 231.1 175 61.7
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 1.7e-58 230.7 172 63.4
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 2.2e-58 230.3 170 62.9
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 2.2e-58 230.3 165 65.5
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 3.7e-58 229.6 164 67.1
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 4.9e-58 229.2 192 55.7
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 4.9e-58 229.2 170 62.9
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 4.9e-58 229.2 162 64.8
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 4.9e-58 229.2 173 60.7
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.9e-57 227.3 147 72.1
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 3.2e-57 226.5 169 61.5
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.2e-56 224.6 167 64.1
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 3.5e-56 223.0 167 63.5
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 4.6e-56 222.6 168 63.1
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 6.0e-56 222.2 164 64.6
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.0e-55 221.5 135 82.2
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 1.3e-55 221.1 168 62.5
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 2.3e-55 220.3 175 60.0
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 3.9e-55 219.5 177 58.8
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 3.9e-55 219.5 177 58.8
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 6.6e-55 218.8 163 60.7
BcaC02g11049 Brassica carinata HOM05D005325 ORTHO05D003507 1.4e-52 211.1 131 87.8
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 5.2e-52 209.1 157 59.2
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 5.8e-51 205.7 152 62.5
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 7.5e-51 205.3 163 57.7
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 4.9e-50 202.6 140 63.6
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.4e-49 200.3 147 63.9
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.2e-48 198.0 137 64.2
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 2.7e-48 196.8 179 52.0
BcaB02g10272 Brassica carinata HOM05D005325 ORTHO05D003507 6.0e-48 195.7 111 90.1
BcaB06g28321 Brassica carinata HOM05D005325 ORTHO05D003507 3.0e-47 193.4 131 82.4
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 8.6e-47 191.8 139 64.7
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.2e-45 188.0 135 65.2
Carub.0004s1074 Capsella rubella HOM05D005325 ORTHO05D003507 3.6e-45 186.4 127 81.9
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 4.0e-44 183.0 137 75.2
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.4e-41 174.5 178 49.4
Sp4g12360 Schrenkiella parvula HOM05D005325 ORTHO05D003507 1.4e-41 174.5 131 79.4
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 3.2e-41 173.3 160 51.2
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 7.1e-41 172.2 130 75.4
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 9.2e-41 171.8 167 47.9
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 3.0e-39 166.8 128 74.2
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 5.1e-39 166.0 131 71.0
CARHR122980 Cardamine hirsuta HOM05D005325 ORTHO05D003507 8.6e-39 165.2 131 75.6
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 4.3e-38 162.9 143 60.1
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 6.2e-37 159.1 131 71.8
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 1.4e-36 157.9 134 67.9
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 2.4e-36 157.1 133 68.4
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 2.4e-36 157.1 132 68.9
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 5.2e-36 156.0 127 68.5
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 6.8e-36 155.6 173 43.9
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 8.9e-36 155.2 172 45.9
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 5.8e-35 152.5 129 66.7
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 5.8e-35 152.5 129 66.7
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 8.4e-34 148.7 131 66.4
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 1.4e-33 147.9 130 66.9
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 1.9e-33 147.5 131 65.6
BcaC07g42458 Brassica carinata HOM05D005325 ORTHO05D003507 3.0e-31 140.2 131 63.4
BolC5t29309H Brassica oleracea HOM05D005325 ORTHO05D003507 3.0e-31 140.2 131 63.4
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 7.3e-30 135.6 129 62.8
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.8e-26 123.2 128 50.0
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 3.6e-21 106.7 159 40.3
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 4.5e-19 99.8 72 68.1
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.9e-17 94.4 54 74.1
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 1.0e-15 88.6 151 39.7
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 1.3e-15 88.2 185 33.5
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 5.3e-12 76.3 96 51.0
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 9.0e-12 75.5 98 44.9
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 4.5e-11 73.2 132 40.2
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 1.9e-09 67.8 122 38.5
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 2.5e-09 67.4 119 42.0
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 4.2e-09 66.6 118 42.4
BolC4t23645H Brassica oleracea HOM05D000003 ORTHO05D001498 9.3e-09 65.5 69 55.1
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 1.2e-08 65.1 107 40.2
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 3.5e-08 63.5 118 34.7
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 7.9e-08 62.4 90 46.7
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.3e-07 61.6 132 37.1
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 1.8e-07 61.2 105 42.9
Gorai.003G124100 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.9e-07 60.1 120 42.5
Gohir.D03G117700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 5.1e-07 59.7 120 42.5
Gohir.A03G049600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 6.7e-07 59.3 120 41.7
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.9e-06 57.8 115 37.4
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.9e-06 57.8 115 37.4
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.5e-06 57.4 115 37.4
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 2.5e-06 57.4 123 38.2
TWI79G1354 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 2.5e-06 57.4 94 41.5
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 2.5e-06 57.4 117 39.3
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 3.3e-06 57.0 116 37.1
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 3.3e-06 57.0 133 39.1
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 4.3e-06 56.6 119 34.5
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 5.7e-06 56.2 109 35.8
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 5.7e-06 56.2 130 33.1
Potri.001G249500 Populus trichocarpa HOM05D004233 ORTHO05D003507 5.7e-06 56.2 90 44.4
Potri.009G043501 Populus trichocarpa HOM05D004233 ORTHO05D003507 9.6e-06 55.5 100 46.0


User provided reference genes

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