Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 8.0e-177 623.6 309 100.0
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 1.3e-142 510.0 255 99.6
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 1.9e-138 496.1 255 96.9
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 1.2e-137 493.4 255 96.5
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 1.2e-137 493.4 255 96.5
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 2.3e-131 472.6 268 87.3
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 1.2e-129 466.8 268 85.8
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 2.8e-129 465.7 254 89.4
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 8.1e-129 464.2 254 89.0
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 3.1e-128 462.2 240 95.4
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 8.9e-128 460.7 265 86.4
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 8.9e-128 460.7 265 86.4
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 2.6e-127 459.1 265 85.3
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 2.6e-127 459.1 265 85.3
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 3.2e-125 452.2 253 87.0
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 2.1e-124 449.5 267 82.8
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 3.0e-123 445.7 240 90.0
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 2.1e-121 439.5 240 89.6
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 2.8e-121 439.1 240 89.6
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 4.0e-120 435.3 240 88.3
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 1.1e-117 427.2 253 81.0
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 1.5e-114 416.8 268 76.9
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 4.3e-114 415.2 252 80.2
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 9.6e-114 414.1 254 79.1
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 1.3e-113 413.7 253 79.4
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.3e-113 413.7 253 77.9
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 1.3e-113 413.7 253 77.9
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 1.6e-113 413.3 252 78.2
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 1.6e-113 413.3 254 79.5
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 2.1e-113 412.9 250 79.6
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.1e-113 412.9 250 79.6
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.1e-113 412.9 250 79.6
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 2.8e-113 412.5 253 78.7
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 4.8e-113 411.8 261 77.4
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 1.4e-112 410.2 254 77.6
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.4e-112 410.2 250 78.8
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 1.4e-112 410.2 254 79.1
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 1.8e-112 409.8 266 75.9
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 1.8e-112 409.8 256 78.5
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 2.4e-112 409.5 250 80.4
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 2.4e-112 409.5 250 79.6
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 4.0e-112 408.7 256 77.7
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 5.3e-112 408.3 246 81.3
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 5.3e-112 408.3 248 80.2
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 6.9e-112 407.9 250 80.4
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 9.0e-112 407.5 250 79.2
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 1.2e-111 407.1 260 76.9
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.2e-111 407.1 255 79.2
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 1.2e-111 407.1 248 79.4
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 1.2e-111 407.1 263 74.5
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 1.5e-111 406.8 256 76.2
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 4.5e-111 405.2 246 80.5
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 7.6e-111 404.4 250 79.6
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 1.3e-110 403.7 265 76.6
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 2.9e-110 402.5 265 76.2
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 2.9e-110 402.5 262 75.2
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 4.9e-110 401.7 238 80.3
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 6.4e-110 401.4 248 79.4
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 6.4e-110 401.4 248 79.0
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 1.4e-109 400.2 251 78.9
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.4e-109 400.2 241 80.5
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 3.2e-109 399.1 255 74.9
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 4.2e-109 398.7 239 79.5
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 4.2e-109 398.7 251 77.7
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 4.2e-109 398.7 266 73.3
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 9.3e-109 397.5 237 80.2
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 1.2e-108 397.1 237 79.3
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 2.7e-108 396.0 235 80.0
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 3.5e-108 395.6 245 75.5
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 1.3e-107 393.7 248 76.2
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.8e-107 393.3 303 64.7
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.3e-107 392.9 247 77.3
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 2.3e-107 392.9 238 78.2
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 3.0e-107 392.5 233 78.5
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 5.1e-107 391.7 249 75.5
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 5.1e-107 391.7 259 74.9
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 5.1e-107 391.7 254 75.2
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 8.7e-107 391.0 288 67.4
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 1.1e-106 390.6 233 78.5
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.1e-106 390.6 245 78.0
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.3e-106 388.7 245 73.5
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 8.1e-105 384.4 239 75.7
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 1.8e-104 383.3 246 75.6
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 3.1e-104 382.5 238 77.3
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 3.1e-104 382.5 256 73.0
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.2e-103 380.6 258 73.6
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 2.6e-103 379.4 247 74.9
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 1.3e-102 377.1 238 74.8
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 1.3e-102 377.1 253 72.3
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 1.7e-102 376.7 245 74.3
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 6.5e-102 374.8 221 80.5
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 8.4e-102 374.4 268 70.9
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.4e-101 373.6 247 73.7
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 1.9e-101 373.2 237 74.3
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 2.5e-101 372.9 249 71.5
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.6e-100 370.2 244 72.5
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.1e-100 369.8 254 70.9
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 2.7e-100 369.4 247 72.9
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.0e-99 367.5 245 70.6
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 1.8e-99 366.7 241 72.2
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 3.0e-99 365.9 235 73.2
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 5.1e-99 365.2 238 75.6
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 7.4e-98 361.3 225 74.7
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 3.7e-97 359.0 371 53.1
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 3.7e-97 359.0 253 69.2
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 1.2e-95 354.0 222 75.2
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 3.0e-91 339.3 279 62.0
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 5.1e-91 338.6 272 62.9
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.3e-90 335.5 242 67.4
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 1.6e-89 333.6 225 72.0
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 2.0e-87 326.6 264 61.7
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.0e-86 324.3 239 65.7
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 2.9e-86 322.8 253 63.6
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 5.0e-86 322.0 241 63.1
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 2.1e-84 316.6 188 80.9
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 7.7e-79 298.1 235 60.9
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 1.4e-77 293.9 177 81.4
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 1.8e-75 287.0 238 58.0
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 2.8e-73 279.6 174 77.6
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 4.8e-73 278.9 258 57.8
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 4.5e-71 272.3 193 69.4
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 1.7e-70 270.4 223 61.0
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 2.9e-70 269.6 242 58.3
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.1e-66 257.7 234 56.4
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.2e-60 237.7 259 51.0
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 9.8e-58 228.0 155 74.2
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.7e-57 227.3 253 49.4
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 6.3e-57 225.3 171 62.0
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 1.2e-52 211.1 139 74.8
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 4.0e-51 206.1 245 46.9
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 2.2e-49 200.3 124 76.6
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 4.9e-49 199.1 230 43.5
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.6e-46 188.7 106 82.1
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 2.1e-44 183.7 124 71.8
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 3.0e-43 179.9 219 44.7
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.2e-41 173.7 221 42.5
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 6.8e-35 152.1 115 69.6
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 8.3e-33 145.2 126 60.3
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 9.2e-32 141.7 87 75.9
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 1.3e-30 137.9 87 72.4
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 3.9e-30 136.3 156 49.4
BraA05t20267Z Brassica rapa HOM05D004677 ORTHO05D108402 1.4e-24 117.9 56 100.0
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 2.4e-24 117.1 79 77.2
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 7.1e-24 115.5 254 31.9
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 2.3e-22 110.5 85 63.5
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 3.3e-21 106.7 64 75.0
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.2e-15 88.2 99 48.5
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 5.1e-14 82.8 182 38.5
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.3e-13 80.1 47 76.6
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-09 67.8 71 53.5
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.9e-09 67.0 248 26.2
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 3.2e-08 63.5 223 26.0
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 7.1e-08 62.4 69 53.6
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-06 57.8 28 92.9
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 1.7e-06 57.8 220 25.9
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 3.0e-06 57.0 220 25.9
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 5.1e-06 56.2 220 25.5
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 8.7e-06 55.5 37 73.0
Mapoly0091s0038 Marchantia polymorpha HOM05D001214 ORTHO05D001029 8.7e-06 55.5 202 32.2


User provided reference genes

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