Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 9.0e-59 229.9 108 100.0
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 9.0e-59 229.9 108 100.0
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 1.7e-57 225.7 108 98.1
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 1.7e-57 225.7 108 98.1
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 2.9e-57 224.9 108 97.2
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 4.9e-57 224.2 108 97.2
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 7.1e-56 220.3 109 96.3
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 1.0e-54 216.5 109 93.6
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 3.0e-54 214.9 109 93.6
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 3.0e-54 214.9 109 93.6
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 3.0e-54 214.9 109 93.6
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 3.0e-54 214.9 109 93.6
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 3.0e-54 214.9 109 93.6
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 2.5e-53 211.8 107 93.5
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 2.5e-53 211.8 108 93.5
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 2.1e-52 208.8 109 93.6
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 2.9e-49 198.4 109 87.2
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 2.7e-47 191.8 108 87.0
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 7.9e-47 190.3 96 93.8
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 2.1e-44 182.2 110 77.3
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 2.1e-44 182.2 110 77.3
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 4.5e-34 147.9 117 62.4
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.6e-31 139.4 115 64.3
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 3.6e-31 138.3 119 57.1
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 3.6e-31 138.3 115 64.3
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 3.9e-30 134.8 122 57.4
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 6.7e-30 134.0 114 57.9
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 8.8e-30 133.7 106 67.0
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 8.8e-30 133.7 117 59.0
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.9e-29 132.5 118 60.2
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 1.9e-29 132.5 120 55.8
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 2.5e-29 132.1 114 57.0
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 3.3e-29 131.7 106 61.3
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 5.7e-29 131.0 120 55.8
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 7.4e-29 130.6 110 58.2
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 1.3e-28 129.8 110 58.2
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 1.7e-28 129.4 114 57.0
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 2.2e-28 129.0 121 54.5
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 2.8e-28 128.6 100 67.0
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 2.8e-28 128.6 110 57.3
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 2.8e-28 128.6 110 57.3
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 3.7e-28 128.3 117 55.6
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 3.7e-28 128.3 110 57.3
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 4.8e-28 127.9 111 58.6
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 6.3e-28 127.5 109 56.9
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 6.3e-28 127.5 112 58.0
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 6.3e-28 127.5 112 56.2
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 6.3e-28 127.5 116 54.3
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 8.2e-28 127.1 118 56.8
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 8.2e-28 127.1 111 58.6
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 8.2e-28 127.1 124 54.8
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 1.1e-27 126.7 110 57.3
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 1.4e-27 126.3 113 54.0
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 1.4e-27 126.3 113 54.0
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 2.4e-27 125.6 122 53.3
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 2.4e-27 125.6 115 60.0
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 2.4e-27 125.6 103 62.1
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 3.1e-27 125.2 121 57.0
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 5.3e-27 124.4 113 56.6
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 6.9e-27 124.0 118 55.9
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 1.2e-26 123.2 116 56.9
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 1.5e-26 122.9 119 52.9
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 1.5e-26 122.9 117 54.7
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 2.0e-26 122.5 110 59.1
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 2.6e-26 122.1 125 49.6
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 2.6e-26 122.1 121 57.0
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 3.4e-26 121.7 117 54.7
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 3.4e-26 121.7 106 54.7
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 3.4e-26 121.7 115 56.5
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 3.4e-26 121.7 115 51.3
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 4.5e-26 121.3 118 55.1
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 4.5e-26 121.3 122 51.6
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 5.9e-26 120.9 116 54.3
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 7.7e-26 120.6 115 54.8
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 7.7e-26 120.6 110 58.2
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 1.7e-25 119.4 118 58.5
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 1.7e-25 119.4 119 50.4
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 1.7e-25 119.4 118 58.5
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 1.7e-25 119.4 117 53.8
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 1.7e-25 119.4 113 53.1
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 2.2e-25 119.0 119 52.1
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 3.8e-25 118.2 116 53.4
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 3.8e-25 118.2 110 52.7
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 3.8e-25 118.2 117 51.3
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 3.8e-25 118.2 117 51.3
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 6.5e-25 117.5 116 51.7
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 6.5e-25 117.5 115 53.9
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 8.5e-25 117.1 106 54.7
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 8.5e-25 117.1 106 54.7
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 8.5e-25 117.1 115 54.8
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 1.1e-24 116.7 112 50.9
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 1.4e-24 116.3 117 53.0
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 1.9e-24 115.9 112 52.7
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 1.9e-24 115.9 120 51.7
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 1.9e-24 115.9 117 53.8
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 2.5e-24 115.5 102 61.8
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 3.2e-24 115.2 118 50.8
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 3.2e-24 115.2 115 57.4
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 4.2e-24 114.8 117 52.1
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 5.5e-24 114.4 112 52.7
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 7.2e-24 114.0 112 51.8
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 7.2e-24 114.0 112 51.8
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 7.2e-24 114.0 112 51.8
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 7.2e-24 114.0 124 48.4
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 1.2e-23 113.2 119 48.7
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 1.2e-23 113.2 106 54.7
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.2e-23 113.2 107 53.3
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.2e-23 113.2 107 53.3
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 2.1e-23 112.5 110 52.7
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 2.1e-23 112.5 110 52.7
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 2.1e-23 112.5 116 52.6
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 2.1e-23 112.5 103 58.3
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.6e-23 111.7 110 51.8
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 3.6e-23 111.7 119 53.8
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 4.7e-23 111.3 114 50.0
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 6.1e-23 110.9 114 50.9
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 7.9e-23 110.5 105 51.4
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 7.9e-23 110.5 105 51.4
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 7.9e-23 110.5 102 53.9
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 7.9e-23 110.5 108 51.9
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 1.0e-22 110.2 98 55.1
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 1.4e-22 109.8 110 51.8
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 1.8e-22 109.4 123 50.4
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 1.8e-22 109.4 118 51.7
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 2.3e-22 109.0 123 51.2
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 2.3e-22 109.0 118 48.3
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 3.9e-22 108.2 114 50.9
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 5.1e-22 107.8 117 47.9
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 5.1e-22 107.8 112 48.2
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 6.7e-22 107.5 105 53.3
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 6.7e-22 107.5 115 55.7
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 8.8e-22 107.1 118 50.8
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 1.1e-21 106.7 70 71.4
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.1e-21 106.7 101 54.5
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 1.1e-21 106.7 117 49.6
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 1.1e-21 106.7 125 48.8
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 1.1e-21 106.7 115 52.2
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 2.0e-21 105.9 115 49.6
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 2.6e-21 105.5 102 54.9
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 3.3e-21 105.1 110 51.8
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 5.7e-21 104.4 105 53.3
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 5.7e-21 104.4 108 51.9
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 5.7e-21 104.4 110 50.9
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 5.7e-21 104.4 115 51.3
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 7.4e-21 104.0 105 53.3
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 9.7e-21 103.6 106 52.8
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 9.7e-21 103.6 121 52.9
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 1.3e-20 103.2 104 52.9
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 1.3e-20 103.2 123 47.2
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 1.7e-20 102.8 120 48.3
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 1.7e-20 102.8 108 50.9
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 1.7e-20 102.8 117 46.2
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 3.7e-20 101.7 113 48.7
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 8.2e-20 100.5 96 52.1
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 1.1e-19 100.1 108 50.9
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 1.4e-19 99.8 120 47.5
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 2.4e-19 99.0 122 45.1
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 2.4e-19 99.0 104 50.0
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 2.0e-18 95.9 107 49.5
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 2.6e-18 95.5 104 49.0
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 3.4e-18 95.1 96 52.1
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 3.4e-18 95.1 108 49.1
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 5.9e-18 94.4 106 46.2
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 6.5e-17 90.9 132 40.9
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 8.5e-17 90.5 87 55.2
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 8.5e-17 90.5 123 41.5
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 8.5e-17 90.5 121 43.0
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 2.7e-15 85.5 108 47.2
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 1.4e-14 83.2 103 46.6
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 6.7e-14 80.9 145 35.2
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 5.7e-13 77.8 93 48.4
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 5.7e-13 77.8 89 46.1
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 5.7e-13 77.8 112 42.9
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 1.3e-12 76.6 105 38.1
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 1.7e-12 76.3 135 34.8
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 1.7e-12 76.3 152 33.6
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 2.8e-12 75.5 96 47.9
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 1.7e-09 66.2 145 33.8
AagrBONN_evm.TU.Sc2ySwM_362.1976 Anthoceros agrestis HOM05D003630 ORTHO05D004151 8.0e-07 57.4 61 49.2


User provided reference genes

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