Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 0.0e+00 2306.6 1248 100.0
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 0.0e+00 2192.5 1254 95.1
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 0.0e+00 1986.5 1262 86.6
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 0.0e+00 1977.2 1262 86.5
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 0.0e+00 1973.7 1262 86.4
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 0.0e+00 1877.8 1262 82.6
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 0.0e+00 1700.3 1288 74.5
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 0.0e+00 1530.4 1295 68.7
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 0.0e+00 1479.2 1297 66.5
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 0.0e+00 1446.0 1299 65.6
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 0.0e+00 1442.9 1283 66.0
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 0.0e+00 1318.5 1280 63.0
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 0.0e+00 1294.3 1263 60.8
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 0.0e+00 1122.1 1077 64.0
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 8.0e-268 927.9 1350 47.1
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 3.8e-262 909.1 748 67.2
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 1.7e-222 777.3 674 63.1
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 3.5e-207 726.5 710 58.6
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 8.0e-127 459.5 498 61.0
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 1.4e-126 458.8 1438 32.3
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 5.4e-123 446.8 1479 31.2
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 6.4e-116 423.3 287 76.0
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 1.3e-113 415.6 1426 30.7
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 6.6e-113 413.3 281 75.1
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 6.2e-111 406.8 287 73.5
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 1.9e-107 395.2 1093 32.1
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 3.5e-106 391.0 1084 31.0
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 1.5e-101 375.6 1066 31.8
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 9.3e-99 366.3 1126 31.2
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.7e-98 364.8 1127 31.2
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 1.1e-96 359.4 1490 28.5
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.5e-96 359.0 1136 30.5
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 3.3e-96 357.8 1466 29.3
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 7.3e-96 356.7 1118 30.8
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.4e-94 352.4 1152 30.8
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 1.8e-94 352.1 1469 28.8
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.1e-94 351.3 1445 29.3
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 3.1e-94 351.3 1190 30.3
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 1.5e-93 349.0 1462 29.0
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.1e-90 338.6 1141 29.3
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.7e-90 338.2 1541 28.0
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 7.4e-88 330.1 1483 28.9
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 2.8e-87 328.2 1371 28.7
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 4.8e-87 327.4 1081 29.7
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 8.1e-87 326.6 1548 27.8
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 8.1e-87 326.6 1432 28.2
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 2.4e-86 325.1 1061 30.8
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 3.1e-86 324.7 860 32.6
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.6e-85 321.6 1454 27.6
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 1.1e-83 316.2 1113 29.2
BolC3t14646H Brassica oleracea HOM05D005129 ORTHO05D005585 1.9e-83 315.5 344 64.2
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 4.2e-83 314.3 1456 28.0
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.2e-82 312.8 1445 28.2
Aa31LG10G6530 Aethionema arabicum HOM05D005129 ORTHO05D005585 7.9e-82 310.1 499 47.5
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 1.9e-80 305.4 1436 26.9
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.6e-79 302.4 1446 28.1
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 6.2e-79 300.4 855 31.5
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 6.9e-78 297.0 1347 28.9
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 2.2e-76 292.0 1425 28.2
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.4e-75 289.3 1101 28.7
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 2.7e-74 285.0 865 30.3
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 6.7e-73 280.4 1151 26.9
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.3e-71 276.2 790 30.4
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 2.4e-70 271.9 1460 26.0
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 5.3e-70 270.8 1003 28.7
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.6e-69 268.5 1099 28.0
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 5.9e-69 267.3 1040 26.7
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 1.7e-68 265.8 1187 25.6
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 2.9e-68 265.0 1156 26.7
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 6.5e-68 263.8 712 31.5
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 4.2e-67 261.2 1027 28.1
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 1.2e-66 259.6 1213 27.0
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 2.7e-66 258.5 948 28.4
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 3.6e-66 258.1 1101 27.0
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.0e-65 256.5 1048 27.7
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 3.0e-65 255.0 1228 26.1
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 3.9e-65 254.6 1178 25.9
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 1.5e-64 252.7 1396 25.9
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 2.5e-64 251.9 1227 26.6
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 7.4e-64 250.4 1507 25.2
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 9.7e-64 250.0 1371 26.5
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 1.3e-63 249.6 1436 25.4
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 6.9e-62 243.8 1108 28.2
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 1.5e-61 242.7 850 27.9
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 5.9e-61 240.7 811 29.1
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 1.3e-60 239.6 1363 25.2
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 2.9e-60 238.4 1054 26.5
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 7.2e-59 233.8 1380 24.3
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 1.6e-58 232.6 1409 26.1
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 3.6e-58 231.5 1136 25.9
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 1.0e-57 229.9 1357 26.2
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 1.0e-57 229.9 1418 25.1
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 1.8e-57 229.2 1058 28.2
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 9.7e-56 223.4 962 26.6
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.4e-54 219.5 983 28.0
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 3.1e-54 218.4 954 26.3
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 7.0e-54 217.2 1039 26.7
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 4.5e-53 214.5 876 27.3
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 5.9e-53 214.2 1100 26.5
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.2e-50 206.5 715 30.2
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 8.0e-50 203.8 994 25.1
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 2.3e-49 202.2 1165 25.6
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 3.9e-49 201.4 1389 25.5
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 2.2e-47 195.7 1056 24.8
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 2.0e-45 189.1 1057 24.3
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 5.9e-45 187.6 924 25.6
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 5.0e-44 184.5 1010 24.7
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 3.2e-43 181.8 650 26.8
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 4.0e-41 174.9 1392 23.7
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.6e-40 172.2 396 34.1
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.6e-40 172.2 396 34.1
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.2e-39 169.1 396 33.8
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 5.0e-36 157.9 574 28.0
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.5e-32 146.4 450 28.2
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 3.8e-28 131.7 1234 23.2
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 4.2e-27 128.3 233 37.3
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 3.7e-23 115.2 768 24.2
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 3.7e-23 115.2 488 27.3
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 1.4e-17 96.7 153 37.9
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 3.1e-17 95.5 136 41.2
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 6.8e-17 94.4 271 28.4
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 6.4e-15 87.8 109 43.1
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 4.1e-14 85.1 341 25.2
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 4.1e-14 85.1 386 23.6
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 2.7e-13 82.4 151 35.1
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.5e-11 76.6 196 35.2
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 8.0e-10 70.9 157 34.4
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 4.0e-09 68.6 144 33.3
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 2.6e-08 65.9 949 24.6
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 2.9e-07 62.4 449 27.4
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 2.9e-07 62.4 185 30.3
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 6.4e-07 61.2 996 22.6
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 5.4e-06 58.2 142 32.4


User provided reference genes

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