Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 3.4e-103 378.3 182 100.0
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 3.4e-103 378.3 182 100.0
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.5e-95 352.8 188 92.0
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 7.9e-92 340.5 185 91.4
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 2.3e-91 339.0 184 91.3
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.2e-71 273.5 202 70.8
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 3.0e-67 258.8 203 69.5
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 5.6e-61 238.0 204 64.7
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.8e-60 235.7 200 65.5
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.3e-59 232.6 203 64.0
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 2.4e-56 222.6 192 64.1
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 4.3e-53 211.8 204 57.8
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.3e-49 200.3 208 54.8
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.5e-45 186.8 210 53.8
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 7.3e-45 184.5 197 55.3
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 5.2e-43 178.3 204 52.5
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.9e-41 172.6 205 52.2
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 6.4e-41 171.4 205 50.7
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.1e-40 170.6 208 50.5
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 1.4e-40 170.2 199 50.8
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 1.4e-40 170.2 199 50.8
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 1.4e-40 170.2 199 51.3
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 9.2e-40 167.5 204 51.0
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 2.7e-39 166.0 201 50.7
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 2.7e-39 166.0 201 50.7
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.7e-38 163.3 206 50.0
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 2.3e-38 162.9 180 52.8
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 2.3e-38 162.9 180 52.8
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 2.3e-38 162.9 180 52.8
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.1e-37 160.6 204 48.0
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.7e-33 146.7 215 45.6
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 3.2e-32 142.5 215 44.2
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 1.6e-31 140.2 214 43.9
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 4.6e-31 138.7 211 45.0
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.3e-30 137.1 214 43.5
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.5e-29 132.9 200 44.5
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 9.6e-29 131.0 218 41.3
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.6e-28 129.0 198 42.4
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.6e-28 129.0 198 42.4
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 3.6e-28 129.0 209 43.5
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 1.8e-27 126.7 225 43.1
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.5e-26 123.6 205 41.0
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 3.4e-26 122.5 217 39.6
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.4e-26 122.5 210 41.9
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.4e-26 122.1 209 40.2
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 9.9e-26 120.9 215 38.6
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 9.9e-26 120.9 195 42.1
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.7e-25 120.2 223 38.6
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.7e-25 120.2 201 39.8
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 6.4e-25 118.2 207 41.5
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.1e-24 117.5 228 39.9
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.1e-24 117.5 228 39.9
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.4e-24 117.1 217 37.8
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.4e-24 117.1 217 37.8
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.9e-24 116.7 215 37.2
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 2.4e-24 116.3 222 39.6
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 3.2e-24 115.9 243 37.0
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 1.6e-23 113.6 224 37.9
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 1.6e-23 113.6 225 36.0
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.7e-23 112.8 227 38.3
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 2.7e-23 112.8 225 36.4
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.5e-23 112.5 204 42.2
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 4.6e-23 112.1 232 37.5
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 6.0e-23 111.7 183 42.1
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 6.0e-23 111.7 218 34.9
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 1.0e-22 110.9 171 40.4
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.0e-22 110.9 214 38.3
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.3e-22 110.5 223 37.2
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 2.3e-22 109.8 219 39.3
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 3.0e-22 109.4 231 36.8
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 6.6e-22 108.2 227 35.2
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 8.7e-22 107.8 200 39.0
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 1.5e-21 107.1 208 36.1
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.9e-21 106.7 211 38.4
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.6e-21 105.1 211 36.5
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.6e-21 105.1 203 40.4
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 7.3e-21 104.8 215 37.7
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 9.6e-21 104.4 176 40.9
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 9.6e-21 104.4 223 39.5
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 1.3e-20 104.0 235 33.6
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 1.3e-20 104.0 215 37.2
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.3e-20 104.0 218 38.5
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 2.1e-20 103.2 190 37.4
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.8e-20 102.8 211 36.0
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 3.6e-20 102.4 220 33.6
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 3.6e-20 102.4 186 40.9
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 3.6e-20 102.4 229 36.2
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 3.6e-20 102.4 242 35.1
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 3.6e-20 102.4 239 34.7
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 6.2e-20 101.7 242 34.7
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 8.1e-20 101.3 224 33.5
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.1e-19 100.9 206 36.4
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 1.4e-19 100.5 231 35.9
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.8e-19 100.1 229 33.6
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 4.0e-19 99.0 192 35.4
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.0e-19 99.0 224 33.0
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 9.0e-19 97.8 208 35.1
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 9.0e-19 97.8 223 33.2
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.5e-18 97.1 200 34.5
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 3.4e-18 95.9 206 35.4
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 3.4e-18 95.9 188 38.8
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.5e-18 95.5 219 35.6
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 5.8e-18 95.1 219 36.5
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 7.6e-18 94.7 219 36.1
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 7.6e-18 94.7 219 36.5
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.3e-17 94.0 196 33.7
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.2e-17 93.2 219 36.1
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 2.9e-17 92.8 189 34.9
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 3.8e-17 92.4 229 34.9
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.1e-16 90.9 224 35.7
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 1.1e-16 90.9 215 34.0
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 3.2e-16 89.4 207 32.9
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 4.2e-16 89.0 217 35.0
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 5.4e-16 88.6 227 33.0
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.2e-15 87.4 201 35.3
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.6e-15 87.0 142 42.3
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 2.1e-15 86.7 171 37.4
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.8e-14 83.6 239 34.3
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 2.3e-14 83.2 207 32.4
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.1e-13 80.9 245 31.0
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.1e-13 80.9 178 34.8
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 3.3e-13 79.3 185 36.2
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.3e-13 79.3 177 36.2
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.3e-13 79.0 236 29.7
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 5.6e-13 78.6 203 31.5
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 9.6e-13 77.8 209 28.7
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 3.6e-12 75.9 173 35.8
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 4.0e-11 72.4 152 35.5
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 9.0e-11 71.2 108 41.7
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 9.0e-11 71.2 229 31.0
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 1.2e-10 70.9 227 28.6
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 4.5e-10 68.9 95 42.1
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 7.6e-10 68.2 131 38.2
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.3e-09 67.4 177 32.8
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 1.7e-09 67.0 220 29.1
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 2.2e-09 66.6 228 28.1
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 2.9e-09 66.2 202 29.2
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.8e-09 65.9 187 32.6
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 3.2e-08 62.8 171 28.7
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 4.2e-08 62.4 170 30.6
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 1.6e-07 60.5 213 28.6
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 2.1e-07 60.1 109 38.5
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.7e-07 59.7 161 29.8
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 1.0e-06 57.8 70 41.4
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 6.7e-06 55.1 132 35.6


User provided reference genes

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