Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 1.8e-207 725.7 375 100.0
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 1.7e-205 719.2 375 99.2
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 7.6e-198 693.7 377 95.5
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 4.9e-197 691.0 378 95.8
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 4.9e-197 691.0 378 95.8
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 4.6e-195 684.5 380 94.7
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 1.9e-188 662.5 377 90.2
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 7.1e-188 660.6 377 90.2
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 9.3e-188 660.2 378 90.2
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 6.0e-187 657.5 378 88.6
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 7.4e-185 650.6 381 88.7
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 9.7e-185 650.2 378 88.9
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 9.7e-185 650.2 378 88.9
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 5.3e-183 644.4 380 88.7
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 6.9e-183 644.0 374 90.4
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.2e-182 643.3 374 89.0
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 2.5e-180 635.6 379 87.3
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.0e-174 615.9 374 87.7
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.3e-160 570.1 418 73.4
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 2.0e-145 519.6 367 75.2
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 5.5e-140 501.5 379 69.1
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 7.2e-140 501.1 377 71.1
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 1.2e-139 500.4 373 71.3
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 2.1e-139 499.6 378 70.6
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 4.7e-139 498.4 380 69.7
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 1.0e-138 497.3 372 69.4
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 1.0e-138 497.3 375 70.4
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 2.3e-138 496.1 384 69.5
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 2.3e-138 496.1 378 69.8
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 4.0e-138 495.4 371 71.4
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 2.6e-137 492.7 382 68.8
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 3.4e-137 492.3 377 69.2
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 4.4e-137 491.9 323 77.4
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.4e-135 486.9 371 69.8
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 1.8e-135 486.5 377 69.8
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 2.4e-135 486.1 378 69.6
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 2.4e-135 486.1 336 73.2
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.6e-134 483.4 376 67.6
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 2.7e-134 482.6 373 69.4
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 2.7e-134 482.6 373 69.4
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 4.5e-134 481.9 376 69.1
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 7.8e-134 481.1 377 68.7
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.3e-133 480.3 351 70.1
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 1.7e-133 479.9 378 69.3
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.7e-133 479.9 377 68.4
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 2.9e-133 479.2 341 71.0
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 2.9e-133 479.2 343 72.9
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 2.9e-133 479.2 335 72.5
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 2.9e-133 479.2 373 68.6
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 3.9e-133 478.8 377 67.4
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 8.6e-133 477.6 369 68.6
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 1.1e-132 477.2 378 68.8
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 1.1e-132 477.2 380 66.6
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 1.1e-132 477.2 410 63.4
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.5e-132 476.9 374 68.7
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 2.5e-132 476.1 394 65.5
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 4.3e-132 475.3 380 66.8
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 7.3e-132 474.6 325 74.8
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 7.3e-132 474.6 373 67.8
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 1.2e-131 473.8 355 69.3
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 2.1e-131 473.0 385 67.8
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 6.1e-131 471.5 376 67.8
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 8.0e-131 471.1 362 69.3
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 1.0e-130 470.7 328 72.9
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 1.0e-130 470.7 325 73.5
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 4.0e-130 468.8 379 66.5
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 6.8e-130 468.0 377 65.5
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 8.9e-130 467.6 373 65.7
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 1.2e-129 467.2 377 65.8
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 3.4e-129 465.7 324 72.2
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 4.4e-129 465.3 362 66.9
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 4.4e-129 465.3 325 74.2
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 5.8e-129 464.9 374 66.6
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 7.5e-129 464.5 358 67.0
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 7.5e-129 464.5 379 66.5
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 9.8e-129 464.2 381 66.4
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 6.4e-128 461.5 374 67.6
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 6.4e-128 461.5 376 64.9
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 8.3e-128 461.1 372 67.2
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.1e-127 460.7 340 68.8
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 1.9e-127 459.9 319 71.2
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 3.2e-127 459.1 367 68.7
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 5.4e-127 458.4 367 67.8
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 5.4e-127 458.4 362 69.1
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 5.4e-127 458.4 375 67.2
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 7.0e-127 458.0 382 64.1
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 1.2e-126 457.2 338 68.3
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 1.6e-126 456.8 321 72.0
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 6.0e-126 454.9 321 71.0
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 1.7e-125 453.4 320 70.9
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 5.0e-125 451.8 307 73.6
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 6.6e-125 451.4 382 62.0
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 1.2e-123 447.2 321 70.1
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 1.6e-123 446.8 318 71.4
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 1.4e-122 443.7 365 64.7
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.8e-122 443.4 415 59.0
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 5.2e-122 441.8 400 61.2
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 8.9e-122 441.0 402 60.9
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 1.2e-121 440.7 326 68.4
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 5.8e-121 438.3 353 66.0
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 9.8e-121 437.6 303 71.3
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.3e-120 437.2 276 76.4
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 2.9e-120 436.0 276 75.4
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 2.4e-119 433.0 350 65.4
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 7.1e-119 431.4 276 75.4
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.3e-117 427.2 391 59.3
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 1.3e-117 427.2 272 76.1
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 3.9e-117 425.6 416 56.7
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 6.6e-117 424.9 353 63.2
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 1.1e-116 424.1 367 61.9
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 1.1e-116 424.1 367 61.9
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 1.1e-116 424.1 367 61.9
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 1.5e-116 423.7 391 60.1
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 1.5e-116 423.7 397 59.7
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 1.5e-116 423.7 391 60.1
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 1.9e-116 423.3 364 62.9
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 4.3e-116 422.2 374 61.0
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 5.6e-116 421.8 433 55.9
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 9.5e-116 421.0 377 58.6
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 4.0e-114 415.6 324 68.5
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 1.0e-109 401.0 372 61.3
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 1.3e-109 400.6 329 66.6
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 1.1e-108 397.5 312 67.9
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 4.3e-108 395.6 334 63.8
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 2.2e-104 383.3 362 57.2
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 1.6e-99 367.1 285 67.4
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 8.4e-96 354.8 303 66.0
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 6.0e-94 348.6 338 59.8
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.1e-92 344.4 208 79.3
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 1.2e-86 324.3 337 50.1
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.0e-85 321.2 277 65.3
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 3.9e-85 319.3 270 57.8
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.5e-84 316.6 277 64.6
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 9.6e-84 314.7 190 81.6
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 9.6e-84 314.7 273 57.1
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 1.4e-79 300.8 272 58.8
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 7.9e-70 268.5 269 56.5
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 4.8e-67 259.2 267 57.3
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 1.8e-66 257.3 261 49.0
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 2.1e-62 243.8 243 58.8
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 2.6e-57 226.9 174 66.1
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 4.5e-57 226.1 162 71.6
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 2.2e-56 223.8 174 65.5
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 2.9e-56 223.4 174 65.5
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 1.6e-54 217.6 130 80.8
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 3.2e-39 166.8 155 54.2
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-38 164.9 110 71.8
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 2.3e-37 160.6 98 77.6
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-36 158.3 111 69.4
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.5e-31 140.6 236 44.9
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.6e-30 137.9 72 86.1
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 1.6e-30 137.9 131 58.0
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.0e-29 135.2 72 83.3
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 3.4e-28 130.2 74 81.1
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 4.5e-25 119.8 59 88.1
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 5.9e-25 119.4 114 44.7
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 3.3e-23 113.6 164 42.1
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 8.9e-21 105.5 130 46.2
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 2.2e-19 100.9 69 72.5
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 8.3e-19 99.0 141 41.8
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 9.2e-18 95.5 75 62.7
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 8.6e-16 89.0 48 85.4
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 1.9e-15 87.8 56 78.6
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 6.2e-14 82.8 56 76.8
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 1.4e-13 81.6 53 67.9
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 2.9e-11 73.9 58 65.5
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 4.1e-10 70.1 170 37.1
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 8.6e-08 62.4 161 34.8
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 9.5e-07 58.9 28 96.4
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 9.5e-07 58.9 28 96.4
BraA06t26504Z Brassica rapa HOM05D004120 ORTHO05D033838 8.1e-06 55.8 29 86.2


User provided reference genes

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