Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p09400 Brassica napus HOM05D004809 ORTHO05D006732 1.4e-26 122.1 59 100.0
A05p09440 Brassica napus HOM05D004809 ORTHO05D006732 3.0e-24 114.4 55 98.2
A05p09490 Brassica napus HOM05D004809 ORTHO05D006732 3.0e-24 114.4 55 98.2
C04p11750 Brassica napus HOM05D004809 ORTHO05D006732 3.0e-24 114.4 55 98.2
BcaB02g09358 Brassica carinata HOM05D004809 ORTHO05D006732 1.1e-23 112.5 55 96.4
BcaC02g11751 Brassica carinata HOM05D004809 ORTHO05D006732 1.1e-23 112.5 55 96.4
BolC4t22822H Brassica oleracea HOM05D004809 ORTHO05D006732 1.1e-23 112.5 55 96.4
Thhalv10017936m.g Eutrema salsugineum HOM05D004809 ORTHO05D006732 4.3e-23 110.5 55 94.5
Sp4g18640 Schrenkiella parvula HOM05D004809 ORTHO05D006732 1.6e-22 108.6 55 92.7
AL4G32520 Arabidopsis lyrata HOM05D004809 ORTHO05D006732 3.1e-21 104.4 55 89.1
AT2G36360 Arabidopsis thaliana HOM05D004809 ORTHO05D006732 3.1e-21 104.4 55 89.1
QL04p042558 Quercus lobata HOM05D004809 ORTHO05D006732 5.3e-21 103.6 55 85.5
CAN.G534.16 Capsicum annuum HOM05D004809 ORTHO05D006732 4.5e-20 100.5 55 83.6
Nitab4.5_0005390g0010 Nicotiana tabacum HOM05D004809 ORTHO05D006732 1.0e-19 99.4 55 83.6
RcHm_v2.0_Chr1g0333111 Rosa chinensis HOM05D004809 ORTHO05D006732 1.7e-19 98.6 55 80.0
FvH4_5g38020 Fragaria vesca HOM05D004809 ORTHO05D006732 2.2e-19 98.2 55 81.8
Ciclev10031499m.g Citrus clementina HOM05D004809 ORTHO05D006732 3.8e-19 97.4 55 80.0
Nitab4.5_0000962g0070 Nicotiana tabacum HOM05D004809 ORTHO05D006732 3.8e-19 97.4 55 81.8
Oeu015034.1 Olea europaea HOM05D004809 ORTHO05D006732 3.8e-19 97.4 54 83.3
arahy.Tifrunner.gnm1.ann1.9JEX28 Arachis hypogaea HOM05D004809 ORTHO05D006732 5.0e-19 97.1 52 84.6
arahy.Tifrunner.gnm1.ann1.RW77QZ Arachis hypogaea HOM05D004809 ORTHO05D006732 5.0e-19 97.1 52 84.6
HanXRQChr05g0146831 Helianthus annuus HOM05D004809 ORTHO05D006732 5.0e-19 97.1 55 81.8
Peaxi162Scf00244g01123 Petunia axillaris HOM05D004809 ORTHO05D006732 5.0e-19 97.1 55 81.8
CSS0050047 Camellia sinensis var. sinensis HOM05D004809 ORTHO05D006732 8.5e-19 96.3 55 80.0
CiPaw.13G037200 Carya illinoinensis HOM05D004809 ORTHO05D006732 1.1e-18 95.9 55 81.8
Lj5g0024267 Lotus japonicus HOM05D004809 ORTHO05D006732 1.1e-18 95.9 53 83.0
Cpa.g.c36770 Carica papaya HOM05D004809 ORTHO05D006732 1.4e-18 95.5 54 79.6
Haze_02592 Corylus avellana HOM05D004809 ORTHO05D006732 1.4e-18 95.5 55 80.0
Actinidia18582 Actinidia chinensis HOM05D004809 ORTHO05D006732 1.9e-18 95.1 55 76.4
Gohir.A12G091000 Gossypium hirsutum HOM05D004809 ORTHO05D006732 1.9e-18 95.1 55 78.2
Gohir.D12G091000 Gossypium hirsutum HOM05D004809 ORTHO05D006732 1.9e-18 95.1 55 78.2
MD07G1067800 Malus domestica HOM05D004809 ORTHO05D006732 1.9e-18 95.1 55 81.8
AL4G34350 Arabidopsis lyrata HOM05D004809 ORTHO05D006732 2.5e-18 94.7 57 84.2
MD02G1248400 Malus domestica HOM05D004809 ORTHO05D006732 3.2e-18 94.4 55 81.8
Thecc.10G104900 Theobroma cacao HOM05D004809 ORTHO05D006732 3.2e-18 94.4 57 78.9
Medtr1g492850 Medicago truncatula HOM05D004809 ORTHO05D006732 4.2e-18 94.0 53 81.1
Sopen11g003210 Solanum pennellii HOM05D004809 ORTHO05D006732 5.5e-18 93.6 55 78.2
Gorai.008G098400 Gossypium raimondii HOM05D004809 ORTHO05D006732 7.2e-18 93.2 53 79.2
Psat6g176720 Pisum sativum HOM05D004809 ORTHO05D006732 7.2e-18 93.2 53 79.2
PGSC0003DMG400019479 Solanum tuberosum HOM05D004809 ORTHO05D006732 7.2e-18 93.2 55 76.4
BraA05t19899Z Brassica rapa HOM05D004809 ORTHO05D006732 9.4e-18 92.8 45 97.8
Hma1.2p1_0352F.1_g133010 Hydrangea macrophylla HOM05D004809 ORTHO05D006732 9.4e-18 92.8 55 80.0
Aqoxy4G02860 Aquilegia oxysepala HOM05D004809 ORTHO05D006732 1.2e-17 92.4 55 76.4
SGA_v2.0_scaffold62G21351 Striga asiatica HOM05D004809 ORTHO05D006732 1.2e-17 92.4 54 77.8
Ca_10498_v3 Cicer arietinum L. HOM05D004809 ORTHO05D006732 1.6e-17 92.0 53 79.2
ECA232G3125 Erigeron canadensis HOM05D004809 ORTHO05D006732 1.6e-17 92.0 55 78.2
PGR142G2585 Punica granatum HOM05D004809 ORTHO05D006732 1.6e-17 92.0 55 72.7
Duzib106G1880 Durio zibethinus HOM05D004809 ORTHO05D006732 2.1e-17 91.7 55 78.2
Migut.F00896 Erythranthe guttata HOM05D004809 ORTHO05D006732 2.7e-17 91.3 54 77.8
Glyma.20G187700 Glycine max HOM05D004809 ORTHO05D006732 2.7e-17 91.3 53 81.1
TPR.G2503 Trifolium pratense HOM05D004809 ORTHO05D006732 2.7e-17 91.3 53 77.4
Prupe.2G084800 Prunus persica HOM05D004809 ORTHO05D006732 3.6e-17 90.9 55 76.4
Oeu030502.1 Olea europaea HOM05D004809 ORTHO05D006732 4.6e-17 90.5 54 74.1
Hund06768 Selenicereus undatus HOM05D004809 ORTHO05D006732 4.6e-17 90.5 58 70.7
Solyc11g007320.2 Solanum lycopersicum HOM05D004809 ORTHO05D006732 4.6e-17 90.5 55 76.4
Atru.chr12.976 Acer truncatum HOM05D004809 ORTHO05D006732 7.9e-17 89.7 57 70.2
Lsat_1_v5_gn_0_7340 Lactuca sativa HOM05D004809 ORTHO05D006732 7.9e-17 89.7 55 74.5
EL10Ac4g08666 Beta vulgaris HOM05D004809 ORTHO05D006732 1.0e-16 89.4 55 70.9
ClCG05G021650 Citrullus lanatus HOM05D004809 ORTHO05D006732 1.0e-16 89.4 53 77.4
CANSAT56G2003 Cannabis sativa HOM05D004809 ORTHO05D006732 1.4e-16 89.0 53 77.4
MELO3C012363.2 Cucumis melo HOM05D004809 ORTHO05D006732 1.4e-16 89.0 53 75.5
Sc06g0002220 Simmondsia chinensis HOM05D004809 ORTHO05D006732 1.4e-16 89.0 52 71.2
AUR62035490 Chenopodium quinoa HOM05D004809 ORTHO05D006732 2.3e-16 88.2 52 75.0
Manes.07G089701 Manihot esculenta HOM05D004809 ORTHO05D006732 2.3e-16 88.2 55 76.4
Potri.008G024700 Populus trichocarpa HOM05D004809 ORTHO05D006732 2.3e-16 88.2 55 74.5
DCAR_028402 Daucus carota HOM05D004809 ORTHO05D006732 3.0e-16 87.8 54 77.8
Sed0005221 Sechium edule HOM05D004809 ORTHO05D006732 3.0e-16 87.8 55 74.5
vmacro07229 Vaccinium macrocarpon HOM05D004809 ORTHO05D006732 3.0e-16 87.8 66 65.2
VMungo0720G0771 Vigna mungo HOM05D004809 ORTHO05D006732 3.0e-16 87.8 53 75.5
Phvul.007G104300 Phaseolus vulgaris HOM05D004809 ORTHO05D006732 5.1e-16 87.0 52 76.9
Sabra08G0016600 Salix brachista HOM05D004809 ORTHO05D006732 8.8e-16 86.3 57 71.9
FAN08G1717 Fragaria x ananassa HOM05D004809 ORTHO05D006732 1.1e-15 85.9 71 62.0
unitig_0.g851 Utricularia gibba HOM05D004809 ORTHO05D006732 1.5e-15 85.5 54 66.7
Ah.04g163730 Amaranthus hybridus HOM05D004809 ORTHO05D006732 3.3e-15 84.3 55 67.3
GSVIVG01034738001 Vitis vinifera HOM05D004809 ORTHO05D006732 9.7e-15 82.8 57 68.4
Lalb_Chr02g0151411 Lupinus albus HOM05D004809 ORTHO05D006732 1.7e-14 82.0 54 74.1
ATR0820G085 Amborella trichopoda HOM05D004809 ORTHO05D006732 4.8e-14 80.5 53 67.9
Os03g0835800 Oryza sativa ssp. japonica HOM05D004809 ORTHO05D006732 6.3e-14 80.1 55 67.3
SalBow6G1224 Salvia bowleyana HOM05D004809 ORTHO05D006732 2.4e-13 78.2 70 55.7
Zm00001eb063700 Zea mays HOM05D004809 ORTHO05D006732 2.4e-13 78.2 53 67.9
AagrBONN_evm.TU.Sc2ySwM_228.3607 Anthoceros agrestis HOM05D004809 ORTHO05D006732 4.1e-13 77.4 54 68.5
Mapoly0052s0089 Marchantia polymorpha HOM05D004809 ORTHO05D006732 9.1e-13 76.3 49 67.3
CBR_g30411 Chara braunii HOM05D004809 ORTHO05D006732 1.7e-11 72.0 52 61.5
SMO174G0255 Selaginella moellendorffii HOM05D004809 ORTHO05D006732 3.8e-11 70.9 52 61.5
FAN04G1536 Fragaria x ananassa HOM05D004809 ORTHO05D006732 6.1e-09 63.5 39 74.4
Pp3c12_16110 Physcomitrium patens HOM05D004809 ORTHO05D006732 7.9e-09 63.2 52 57.7
Pp3c12_16113 Physcomitrium patens HOM05D004809 ORTHO05D006732 7.9e-09 63.2 52 57.7
COL.COLO4_20964 Corchorus olitorius HOM05D004809 ORTHO05D006732 1.4e-08 62.4 35 82.9
Rhsim03G0105000 Rhododendron simsii HOM05D004809 ORTHO05D006732 1.8e-08 62.0 55 56.4
Lj2A29T80 Lonicera japonica HOM05D004809 ORTHO05D006732 3.0e-08 61.2 34 79.4
MBI17_g00711_MAGBIO Magnolia biondii HOM05D004809 ORTHO05D006732 3.0e-08 61.2 34 85.3
Cc02_g09980 Coffea canephora HOM05D004809 ORTHO05D006732 6.7e-08 60.1 34 76.5
FAN18G3489 Fragaria x ananassa HOM05D004809 ORTHO05D006732 1.5e-07 58.9 34 76.5
CsaV3_5G035620 Cucumis sativus L. HOM05D004809 ORTHO05D006732 2.6e-07 58.2 34 76.5
CsaV3_7G016260 Cucumis sativus L. HOM05D004809 ORTHO05D006732 2.6e-07 58.2 34 76.5
Eucgr.G02708 Eucalyptus grandis HOM05D004809 ORTHO05D006732 2.6e-07 58.2 46 60.9
Nn6g35016 Nelumbo nucifera HOM05D004809 ORTHO05D006732 2.6e-07 58.2 34 76.5
HPP92_025130 Vanilla planifolia HOM05D004809 ORTHO05D006732 6.3e-06 53.5 35 71.4
Zm00001eb035430 Zea mays HOM05D000742 ORTHO05D000924 8.2e-06 53.1 51 52.9


User provided reference genes

Program Settings