Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 4.9e-208 727.6 385 100.0
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 2.5e-204 715.3 385 98.7
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 9.9e-185 650.2 392 89.8
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.3e-179 633.3 392 88.3
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 6.9e-178 627.5 408 84.8
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 7.9e-158 560.8 399 80.5
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.9e-141 505.4 420 70.2
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.6e-129 466.8 412 68.0
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.3e-125 453.0 410 64.6
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 9.1e-122 441.0 422 66.4
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 6.5e-120 434.9 418 61.7
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 8.6e-120 434.5 413 62.5
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.8e-117 426.8 424 64.4
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 2.7e-113 412.9 426 63.1
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 9.5e-95 351.3 416 54.6
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.3e-88 330.9 421 52.0
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.5e-87 327.4 403 52.9
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 9.5e-87 324.7 420 50.7
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 9.5e-87 324.7 426 50.2
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.4e-77 294.3 409 50.6
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 7.6e-76 288.5 410 49.3
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.3e-75 287.7 421 50.8
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 7.1e-74 282.0 417 48.2
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 4.6e-73 279.3 404 48.3
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 6.0e-73 278.9 433 45.3
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 1.2e-68 264.6 435 42.5
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.2e-68 264.6 438 42.0
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.7e-67 260.8 401 47.4
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.9e-67 260.0 440 43.0
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 8.4e-67 258.5 440 42.7
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 2.4e-66 256.9 433 42.5
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 9.3e-66 255.0 417 43.6
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 9.3e-66 255.0 439 41.9
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 4.6e-65 252.7 448 41.5
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.3e-64 250.4 407 45.0
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 5.6e-63 245.7 427 42.4
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 2.8e-62 243.4 425 42.6
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.8e-62 243.4 439 39.6
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 8.1e-62 241.9 430 42.1
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 9.0e-61 238.4 366 46.7
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.0e-60 237.3 407 43.5
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 7.6e-60 235.3 425 41.2
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 7.6e-60 235.3 450 42.2
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.7e-59 234.2 442 40.7
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 3.8e-59 233.0 428 40.9
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.4e-58 231.1 434 41.0
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 9.3e-58 228.4 425 40.0
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 9.3e-58 228.4 425 40.0
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.6e-57 226.1 437 39.6
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 7.9e-57 225.3 427 39.8
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 5.1e-56 222.6 377 42.4
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 8.7e-56 221.9 437 39.8
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.1e-55 221.5 409 41.3
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 2.5e-55 220.3 448 38.6
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.5e-55 220.3 421 41.6
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 3.7e-54 216.5 431 39.7
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 1.1e-53 214.9 429 38.9
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.4e-53 214.5 426 40.1
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 1.8e-53 214.2 420 39.3
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 2.4e-53 213.8 436 39.2
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 9.0e-53 211.8 438 38.8
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 4.5e-52 209.5 423 39.0
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.0e-51 208.4 424 38.7
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 4.9e-51 206.1 437 37.8
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 1.4e-50 204.5 449 37.6
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.9e-50 204.1 435 39.5
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.9e-50 204.1 431 38.5
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.6e-49 201.1 406 38.9
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.6e-49 201.1 428 39.5
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.6e-49 201.1 401 40.1
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 2.1e-49 200.7 414 39.6
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 3.5e-49 199.9 425 36.9
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.0e-48 198.4 439 38.7
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.3e-48 198.0 407 38.8
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 1.3e-48 198.0 431 36.7
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.8e-48 197.6 437 37.8
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.8e-48 197.6 427 37.7
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 3.0e-48 196.8 427 37.0
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.1e-47 194.9 412 37.6
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 1.1e-47 194.9 418 37.6
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 1.5e-47 194.5 447 37.4
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 1.9e-47 194.1 392 38.8
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 5.7e-47 192.6 410 38.8
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 7.4e-47 192.2 431 38.1
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 1.4e-45 188.0 429 37.3
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.8e-45 187.6 431 36.7
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.8e-45 187.6 411 37.2
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 3.1e-45 186.8 439 36.9
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 4.1e-45 186.4 428 38.8
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 5.3e-45 186.0 451 35.7
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 9.0e-45 185.3 418 36.8
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.2e-44 184.9 431 36.4
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.2e-44 184.9 430 37.7
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 4.5e-44 183.0 405 36.5
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 7.6e-44 182.2 427 37.5
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.7e-43 181.0 401 39.4
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.7e-43 181.0 429 36.1
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 2.2e-43 180.6 422 36.5
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 2.2e-43 180.6 455 36.3
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.8e-43 179.9 454 35.7
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 5.0e-43 179.5 419 36.5
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 9.3e-42 175.3 432 36.1
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 9.3e-42 175.3 448 34.2
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 9.3e-42 175.3 427 36.8
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 4.6e-41 172.9 418 34.9
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 7.9e-41 172.2 442 34.6
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.4e-40 171.4 410 38.3
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 1.4e-40 171.4 438 34.5
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.3e-40 170.6 433 33.3
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 3.0e-40 170.2 441 34.0
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 2.5e-39 167.2 453 34.2
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.3e-39 166.4 379 38.0
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 5.7e-39 166.0 409 35.2
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.8e-37 161.0 374 35.3
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 1.2e-36 158.3 436 33.7
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.9e-36 156.0 444 34.7
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.0e-35 155.2 423 34.3
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.8e-35 153.3 374 34.0
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 3.8e-35 153.3 381 34.4
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 6.5e-35 152.5 453 32.2
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 5.5e-34 149.4 306 36.9
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 5.1e-32 142.9 151 57.0
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 8.2e-30 135.6 432 32.6
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.8e-29 134.4 368 34.5
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 5.3e-29 132.9 402 31.8
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.5e-28 131.3 321 36.1
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 1.3e-27 128.3 402 30.8
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 5.0e-27 126.3 341 32.8
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.5e-26 124.0 149 47.7
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 5.5e-26 122.9 405 31.4
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 3.6e-25 120.2 409 33.0
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.0e-24 118.6 409 32.8
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 1.8e-24 117.9 409 32.8
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 1.8e-24 117.9 417 30.7
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 8.8e-24 115.5 397 28.5
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 7.4e-23 112.5 439 31.4
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 6.3e-22 109.4 266 38.0
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.4e-21 108.2 383 32.6
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 7.0e-21 105.9 184 40.8
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 4.5e-20 103.2 82 62.2
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 7.7e-20 102.4 301 32.9
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.5e-18 98.2 365 32.3
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.5e-18 98.2 381 29.1
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 1.5e-18 98.2 434 29.0
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 9.4e-18 95.5 155 42.6
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.1e-17 94.4 278 35.3
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 3.0e-16 90.5 273 33.7
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 2.0e-15 87.8 184 39.1
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.3e-14 85.1 189 37.6
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.7e-14 84.7 51 88.2
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.2e-14 84.3 163 33.7
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.8e-14 84.0 117 42.7
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 6.3e-14 82.8 205 33.2
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 2.4e-13 80.9 286 30.1
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.1e-13 80.5 216 32.4
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 4.1e-13 80.1 237 32.1
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 1.2e-12 78.6 100 46.0
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.6e-12 78.2 179 36.3
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 7.7e-12 75.9 67 56.7
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 7.7e-12 75.9 125 40.0
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.0e-11 75.5 293 31.4
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 1.7e-11 74.7 55 69.1
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 3.8e-11 73.6 87 44.8
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 3.2e-10 70.5 108 43.5
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 2.7e-09 67.4 135 36.3
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 6.1e-09 66.2 222 29.7
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 6.1e-09 66.2 341 24.6
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.0e-08 65.5 281 27.0
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 2.6e-07 60.8 299 28.1


User provided reference genes

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