Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 4.8e-39 164.1 86 100.0
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 2.0e-37 158.7 86 97.7
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 2.6e-37 158.3 86 97.7
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 2.6e-37 158.3 86 97.7
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 5.9e-37 157.1 86 96.5
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 5.5e-35 150.6 86 95.3
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 1.8e-33 145.6 86 93.0
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 5.7e-32 140.6 86 90.7
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 3.7e-31 137.9 86 89.5
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 1.1e-30 136.3 86 83.7
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 4.1e-30 134.4 86 84.9
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 7.0e-30 133.7 86 83.7
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 1.5e-27 125.9 71 93.0
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 1.9e-27 125.6 86 84.9
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 2.5e-27 125.2 84 79.8
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 9.4e-27 123.2 71 88.7
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 2.3e-25 118.6 71 83.1
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 2.8e-23 111.7 71 81.7
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 1.0e-17 93.2 71 67.6
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 4.4e-16 87.8 81 60.5
BcaC02g07465 Brassica carinata HOM05D007802 ORTHO05D009879 5.7e-16 87.4 81 61.7
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 2.2e-15 85.5 79 58.2
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 1.4e-14 82.8 69 62.3
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 3.1e-14 81.6 82 54.9
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 5.4e-14 80.9 74 55.4
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 5.4e-14 80.9 79 58.2
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 5.4e-14 80.9 79 58.2
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 9.1e-14 80.1 73 57.5
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 1.6e-13 79.3 66 60.6
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 4.5e-13 77.8 82 52.4
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 1.0e-12 76.6 73 54.8
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 1.0e-12 76.6 81 55.6
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 1.0e-12 76.6 87 55.2
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 1.3e-12 76.3 87 51.7
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 1.7e-12 75.9 92 50.0
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 2.3e-12 75.5 79 51.9
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 2.9e-12 75.1 73 54.8
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 3.8e-12 74.7 70 54.3
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 3.8e-12 74.7 81 51.9
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 5.0e-12 74.3 88 52.3
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 5.0e-12 74.3 71 54.9
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 5.0e-12 74.3 82 53.7
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 6.6e-12 73.9 71 57.7
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 6.6e-12 73.9 76 56.6
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 6.6e-12 73.9 73 57.5
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 6.6e-12 73.9 68 57.4
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 8.6e-12 73.6 71 54.9
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 8.6e-12 73.6 67 58.2
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 8.6e-12 73.6 66 56.1
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 8.6e-12 73.6 78 50.0
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 1.5e-11 72.8 83 47.0
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.9e-11 72.4 67 58.2
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 3.3e-11 71.6 69 55.1
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 4.2e-11 71.2 87 48.3
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 9.5e-11 70.1 74 55.4
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 1.2e-10 69.7 83 44.6
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 1.2e-10 69.7 67 56.7
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 2.1e-10 68.9 73 50.7
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 2.1e-10 68.9 78 51.3
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 2.8e-10 68.6 65 56.9
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 3.6e-10 68.2 91 48.4
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.6e-10 68.2 111 41.4
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.6e-10 68.2 111 41.4
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 8.0e-10 67.0 83 44.6
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 8.0e-10 67.0 83 44.6
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 8.0e-10 67.0 80 47.5
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 1.0e-09 66.6 71 50.7
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 1.4e-09 66.2 67 50.7
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 1.4e-09 66.2 67 55.2
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 3.0e-09 65.1 71 47.9
BraA04t18408Z Brassica rapa HOM05D002861 ORTHO05D003104 4.0e-09 64.7 46 78.3
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 5.2e-09 64.3 73 46.6
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 1.2e-08 63.2 72 45.8
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 2.0e-08 62.4 74 51.4
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 2.6e-08 62.0 77 44.2
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 3.4e-08 61.6 76 43.4
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 9.8e-08 60.1 72 44.4
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 2.2e-07 58.9 51 58.8
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 2.2e-07 58.9 51 58.8
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 4.9e-07 57.8 44 63.6
SEGI_16653 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 9.2e-06 53.5 70 44.3


User provided reference genes

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