Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 6.7e-307 1056.6 560 100.0
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 6.7e-307 1056.6 560 100.0
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 3.4e-303 1044.3 560 98.8
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 3.0e-299 1031.2 560 97.5
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 8.7e-299 1029.6 559 97.5
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 1.6e-297 1025.4 560 97.3
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 5.0e-294 1013.8 560 95.4
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 5.0e-286 987.3 561 93.0
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 1.1e-285 986.1 560 93.6
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 2.5e-285 984.9 560 93.2
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 1.1e-277 959.5 531 94.2
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.0e-275 953.0 560 91.1
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 2.8e-273 944.9 560 87.5
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 8.8e-267 923.3 575 85.6
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 4.4e-234 814.7 562 75.6
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 5.8e-234 814.3 563 75.1
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 8.3e-233 810.4 563 74.8
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.9e-232 809.3 563 74.8
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 1.6e-231 806.2 563 76.0
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 2.3e-230 802.4 562 76.3
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 4.3e-229 798.1 601 70.9
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 9.5e-229 797.0 564 74.3
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 4.7e-228 794.7 562 73.7
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 1.1e-227 793.5 563 73.5
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 3.1e-227 792.0 563 76.4
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 6.8e-227 790.8 562 73.5
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 6.8e-227 790.8 562 73.5
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 6.8e-227 790.8 563 73.7
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 9.9e-226 786.9 562 72.4
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 9.9e-226 786.9 562 73.3
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 3.8e-225 785.0 561 72.7
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 9.2e-224 780.4 562 71.9
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 6.0e-223 777.7 562 72.6
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.0e-222 776.9 563 72.1
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 5.1e-222 774.6 563 71.8
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 4.3e-221 771.5 562 71.5
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 7.3e-221 770.8 562 71.9
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 9.6e-221 770.4 562 72.2
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 9.6e-221 770.4 562 72.6
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.2e-220 770.0 563 71.0
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.2e-220 770.0 563 71.0
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.1e-220 769.2 563 74.1
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 2.1e-220 769.2 562 72.6
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 2.8e-220 768.8 561 73.3
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 2.8e-220 768.8 562 72.6
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 1.8e-219 766.1 563 72.3
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 7.6e-218 760.8 562 70.8
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 2.9e-217 758.8 563 71.0
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 1.1e-216 756.9 562 70.5
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 1.4e-216 756.5 627 65.4
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 1.9e-216 756.1 563 71.2
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 1.9e-216 756.1 563 69.3
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 1.6e-215 753.1 563 71.4
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 2.7e-215 752.3 563 70.2
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 1.3e-214 750.0 516 76.0
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 3.0e-214 748.8 563 71.0
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 1.1e-213 746.9 561 70.1
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.1e-213 746.9 566 71.7
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.6e-212 743.0 558 71.9
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 2.8e-212 742.3 559 69.8
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 8.1e-212 740.7 562 68.7
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 4.0e-211 738.4 561 71.7
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 3.8e-209 731.9 577 69.5
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 6.4e-209 731.1 563 68.6
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 1.1e-208 730.3 563 70.9
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 2.1e-207 726.1 563 70.5
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 2.7e-207 725.7 562 67.6
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 2.7e-207 725.7 562 67.6
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 6.0e-207 724.5 561 68.3
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 4.3e-205 718.4 563 67.3
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 1.4e-203 713.4 563 69.3
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.1e-203 712.2 543 71.6
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 7.6e-202 707.6 514 72.2
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 9.9e-202 707.2 614 63.7
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 1.1e-200 703.7 556 66.5
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 1.1e-200 703.7 562 66.9
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 7.1e-200 701.0 566 66.1
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 3.0e-198 695.7 513 71.0
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 3.9e-198 695.3 567 66.1
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 7.4e-197 691.0 577 64.8
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 7.4e-197 691.0 563 64.8
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.3e-196 690.3 526 74.9
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 1.1e-195 687.2 643 59.4
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 5.3e-195 684.9 563 62.2
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 1.0e-193 680.6 563 64.7
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 6.5e-193 677.9 516 70.2
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 7.9e-191 671.0 563 64.1
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 5.1e-190 668.3 547 65.4
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 6.5e-185 651.4 534 65.9
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.7e-169 600.1 471 66.5
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 1.9e-168 596.7 596 58.2
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 4.2e-168 595.5 563 57.2
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.9e-166 589.0 394 76.1
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 5.7e-165 585.1 564 55.9
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 2.1e-159 566.6 456 65.4
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 8.8e-158 561.2 434 67.3
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 1.7e-156 557.0 564 52.7
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 4.8e-156 555.4 570 52.6
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 1.8e-150 537.0 570 50.9
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.1e-144 517.7 554 53.6
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 2.3e-134 483.4 340 74.1
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 2.0e-130 470.3 383 64.8
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 6.8e-126 455.3 307 78.8
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 2.0e-122 443.7 350 67.7
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 2.5e-104 383.6 357 55.7
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.4e-99 367.9 342 60.5
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 9.9e-85 318.5 260 61.5
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 1.0e-81 308.5 546 37.4
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 4.2e-67 260.0 208 66.3
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 2.0e-61 241.1 198 67.2
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 1.8e-57 228.0 198 60.6
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 1.7e-55 221.5 142 75.4
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 2.0e-53 214.5 184 58.7
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 5.7e-48 196.4 131 76.3
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 4.2e-43 180.3 130 77.7
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 4.2e-43 180.3 180 61.7
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 1.8e-41 174.9 178 60.7
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 4.1e-38 163.7 158 62.0
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 4.1e-38 163.7 158 62.0
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 5.5e-35 153.3 160 60.0
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 1.6e-34 151.8 161 53.4
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 2.5e-27 127.9 90 65.6
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.3e-27 127.5 86 76.7
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 9.8e-24 115.9 58 98.3
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 2.8e-23 114.4 77 68.8
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 5.0e-20 103.6 74 67.6
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 5.2e-17 93.6 88 62.5
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 4.4e-16 90.5 86 59.3
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 2.6e-08 64.7 74 48.6
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.3e-07 62.4 47 55.3


User provided reference genes

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