Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p06790 Brassica napus HOM05D000334 ORTHO05D000200 5.0e-48 194.1 98 100.0
BcaC01g05483 Brassica carinata HOM05D000334 ORTHO05D000200 5.3e-18 94.4 57 77.2
A03p22180 Brassica napus HOM05D000334 ORTHO05D000200 5.3e-18 94.4 57 77.2
C03p26260 Brassica napus HOM05D000334 ORTHO05D000200 5.3e-18 94.4 57 77.2
BolC3t15011H Brassica oleracea HOM05D000334 ORTHO05D000200 5.3e-18 94.4 57 77.2
BraA03t11450Z Brassica rapa HOM05D000334 ORTHO05D000200 5.3e-18 94.4 57 77.2
CARHR134490 Cardamine hirsuta HOM05D000334 ORTHO05D000200 1.6e-17 92.8 57 77.2
Sp4g21910 Schrenkiella parvula HOM05D000334 ORTHO05D000200 2.6e-17 92.0 57 75.4
Thhalv10017011m.g Eutrema salsugineum HOM05D000334 ORTHO05D000200 5.9e-17 90.9 57 73.7
AT2G39650 Arabidopsis thaliana HOM05D000334 ORTHO05D000200 1.7e-16 89.4 57 73.7
Carub.0004s2169 Capsella rubella HOM05D000334 ORTHO05D000200 1.7e-16 89.4 57 73.7
AL4G37060 Arabidopsis lyrata HOM05D000334 ORTHO05D000200 3.8e-16 88.2 57 71.9
Aa31LG5G20000 Aethionema arabicum HOM05D000334 ORTHO05D000200 1.4e-13 79.7 79 51.9
THA.LOC104810030 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 1.5e-12 76.3 57 61.4
Ciclev10032209m.g Citrus clementina HOM05D000334 ORTHO05D000200 2.6e-12 75.5 57 59.6
Atru.chr12.447 Acer truncatum HOM05D000334 ORTHO05D000200 2.4e-10 68.9 57 54.4
Manes.10G030100 Manihot esculenta HOM05D000334 ORTHO05D000200 3.1e-10 68.6 57 54.4
Cpa.g.sc1.408 Carica papaya HOM05D000334 ORTHO05D000200 1.2e-09 66.6 57 52.6
Sabra08G0040800 Salix brachista HOM05D000334 ORTHO05D000200 2.0e-09 65.9 57 52.6
Dinv26017 Davidia involucrata HOM05D000334 ORTHO05D000200 2.7e-09 65.5 56 55.4
Thecc.10G041600 Theobroma cacao HOM05D000334 ORTHO05D000200 4.5e-09 64.7 57 49.1
Dinv03044 Davidia involucrata HOM05D000334 ORTHO05D000200 5.9e-09 64.3 56 55.4
Lj1A937T98 Lonicera japonica HOM05D000334 ORTHO05D000200 5.9e-09 64.3 64 46.9
Potri.008G056100 Populus trichocarpa HOM05D000334 ORTHO05D000200 1.0e-08 63.5 57 50.9
Prupe.2G235800 Prunus persica HOM05D000334 ORTHO05D000200 1.0e-08 63.5 57 50.9
Actinidia02946 Actinidia chinensis HOM05D000334 ORTHO05D000200 1.3e-08 63.2 57 52.6
TAR623G0657 Trochodendron aralioides HOM05D000334 ORTHO05D000200 1.3e-08 63.2 57 49.1
GSVIVG01016558001 Vitis vinifera HOM05D000334 ORTHO05D000200 1.7e-08 62.8 57 50.9
Actinidia29228 Actinidia chinensis HOM05D000334 ORTHO05D000200 2.2e-08 62.4 57 52.6
COL.COLO4_15047 Corchorus olitorius HOM05D000334 ORTHO05D000200 2.2e-08 62.4 57 49.1
DCAR_027618 Daucus carota HOM05D000334 ORTHO05D000200 2.2e-08 62.4 56 53.6
PSO151G0125 Papaver somniferum HOM05D000334 ORTHO05D000200 2.2e-08 62.4 57 47.4
MSTRG.288 Avicennia marina HOM05D000334 ORTHO05D000200 2.9e-08 62.0 56 51.8
CiPaw.01G287600 Carya illinoinensis HOM05D000334 ORTHO05D000200 2.9e-08 62.0 57 50.9
Nn2g13347 Nelumbo nucifera HOM05D000334 ORTHO05D000200 2.9e-08 62.0 56 48.2
Potri.010G203700 Populus trichocarpa HOM05D000334 ORTHO05D000200 2.9e-08 62.0 57 50.9
TWI63G1067 Tripterygium wilfordii HOM05D000334 ORTHO05D000200 2.9e-08 62.0 57 54.4
vmacro10231 Vaccinium macrocarpon HOM05D000334 ORTHO05D000200 2.9e-08 62.0 89 41.6
CiPaw.02G184100 Carya illinoinensis HOM05D000334 ORTHO05D000200 3.8e-08 61.6 57 50.9
Gohir.A10G219400 Gossypium hirsutum HOM05D000334 ORTHO05D000200 3.8e-08 61.6 57 47.4
Gohir.D10G228900 Gossypium hirsutum HOM05D000334 ORTHO05D000200 3.8e-08 61.6 57 47.4
Sabra10G0157200 Salix brachista HOM05D000334 ORTHO05D000200 3.8e-08 61.6 57 50.9
Nn2g11114 Nelumbo nucifera HOM05D000334 ORTHO05D000200 5.0e-08 61.2 56 50.0
Duzib114G0862 Durio zibethinus HOM05D000334 ORTHO05D000200 6.5e-08 60.8 57 49.1
QL08p059708 Quercus lobata HOM05D000334 ORTHO05D000200 6.5e-08 60.8 57 49.1
vmacro07172 Vaccinium macrocarpon HOM05D000334 ORTHO05D000200 6.5e-08 60.8 54 53.7
Migut.F01492 Erythranthe guttata HOM05D000334 ORTHO05D000200 8.5e-08 60.5 57 49.1
Gorai.011G261400 Gossypium raimondii HOM05D000334 ORTHO05D000200 8.5e-08 60.5 57 45.6
MD01G1134400 Malus domestica HOM05D000334 ORTHO05D000200 8.5e-08 60.5 57 49.1
PSO339G4065 Papaver somniferum HOM05D000334 ORTHO05D000200 8.5e-08 60.5 57 43.9
Rhsim09G0166100 Rhododendron simsii HOM05D000334 ORTHO05D000200 1.1e-07 60.1 57 49.1
Rhsim03G0130500 Rhododendron simsii HOM05D000334 ORTHO05D000200 1.9e-07 59.3 58 44.8
Cc02_g07830 Coffea canephora HOM05D000334 ORTHO05D000200 2.5e-07 58.9 57 50.9
CSS0007857 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 3.2e-07 58.5 57 47.4
RcHm_v2.0_Chr1g0367191 Rosa chinensis HOM05D000334 ORTHO05D000200 3.2e-07 58.5 56 48.2
Aqoxy2G02141 Aquilegia oxysepala HOM05D000334 ORTHO05D000200 4.2e-07 58.2 56 48.2
Duzib106G1737 Durio zibethinus HOM05D000334 ORTHO05D000200 4.2e-07 58.2 57 47.4
Gohir.A05G349300 Gossypium hirsutum HOM05D000334 ORTHO05D000200 4.2e-07 58.2 57 45.6
Oeu064377.1 Olea europaea HOM05D000334 ORTHO05D000200 4.2e-07 58.2 49 55.1
Cfa001471 Carpinus fangiana HOM05D000334 ORTHO05D000200 5.5e-07 57.8 57 49.1
Haze_17069 Corylus avellana HOM05D000334 ORTHO05D000200 5.5e-07 57.8 57 49.1
Psat3g096080 Pisum sativum HOM05D000334 ORTHO05D000200 5.5e-07 57.8 54 48.1
TPR.G28462 Trifolium pratense HOM05D000334 ORTHO05D000200 5.5e-07 57.8 54 48.1
Sed0019742 Sechium edule HOM05D000334 ORTHO05D000200 7.2e-07 57.4 57 47.4
Hund16086 Selenicereus undatus HOM05D000334 ORTHO05D000200 7.2e-07 57.4 57 47.4
Actinidia13880 Actinidia chinensis HOM05D000334 ORTHO05D000200 9.4e-07 57.0 57 47.4
Medtr7g083080 Medicago truncatula HOM05D000334 ORTHO05D000200 9.4e-07 57.0 53 49.1
CANSAT56G1569 Cannabis sativa HOM05D000334 ORTHO05D000200 1.2e-06 56.6 54 48.1
CANSAT56G3888 Cannabis sativa HOM05D000334 ORTHO05D000200 1.2e-06 56.6 54 48.1
Gohir.D04G063000 Gossypium hirsutum HOM05D000334 ORTHO05D000200 1.2e-06 56.6 57 43.9
Gorai.012G070400 Gossypium raimondii HOM05D000334 ORTHO05D000200 1.2e-06 56.6 57 43.9
PGR044G0712 Punica granatum HOM05D000334 ORTHO05D000200 1.2e-06 56.6 57 47.4
Lj1g0026177 Lotus japonicus HOM05D000334 ORTHO05D000200 1.6e-06 56.2 53 49.1
PSO339G3241 Papaver somniferum HOM05D000334 ORTHO05D000200 1.6e-06 56.2 56 42.9
arahy.Tifrunner.gnm1.ann1.0GZ2Z9 Arachis hypogaea HOM05D000334 ORTHO05D000200 2.1e-06 55.8 53 47.2
arahy.Tifrunner.gnm1.ann1.EFAC5F Arachis hypogaea HOM05D000334 ORTHO05D000200 2.1e-06 55.8 53 47.2
Lj1C152T5 Lonicera japonica HOM05D000334 ORTHO05D000200 2.1e-06 55.8 57 47.4
TAR633G1689 Trochodendron aralioides HOM05D000334 ORTHO05D000200 2.1e-06 55.8 58 44.8
Eucgr.J00012 Eucalyptus grandis HOM05D000334 ORTHO05D000200 2.7e-06 55.5 57 45.6
PSO384G4686 Papaver somniferum HOM05D000334 ORTHO05D000200 2.7e-06 55.5 56 42.9
Ah.10g037240 Amaranthus hybridus HOM05D000334 ORTHO05D000200 3.6e-06 55.1 58 43.1
ClCG09G019720 Citrullus lanatus HOM05D000334 ORTHO05D000200 3.6e-06 55.1 57 45.6
FvH4_7g22510 Fragaria vesca HOM05D000334 ORTHO05D000200 3.6e-06 55.1 57 45.6
FAN01G1536 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.6e-06 55.1 57 45.6
FAN06G2773 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.6e-06 55.1 57 45.6
FAN06G4615 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.6e-06 55.1 57 45.6
FAN10G1791 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.6e-06 55.1 57 45.6
Lsat_1_v5_gn_2_119201 Lactuca sativa HOM05D000334 ORTHO05D000200 3.6e-06 55.1 59 45.8
MBI05_g22029_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 3.6e-06 55.1 57 45.6
Sed0007313 Sechium edule HOM05D000334 ORTHO05D000200 3.6e-06 55.1 52 50.0
CsaV3_5G026680 Cucumis sativus L. HOM05D000334 ORTHO05D000200 4.7e-06 54.7 57 43.9
FAN03G2662 Fragaria x ananassa HOM05D000334 ORTHO05D000200 4.7e-06 54.7 57 45.6
Glyma.02G091500 Glycine max HOM05D000334 ORTHO05D000200 4.7e-06 54.7 53 47.2
Glyma.18G291600 Glycine max HOM05D000334 ORTHO05D000200 4.7e-06 54.7 53 47.2
Hund13765 Selenicereus undatus HOM05D000334 ORTHO05D000200 4.7e-06 54.7 56 42.9
ECA240G1439 Erigeron canadensis HOM05D000334 ORTHO05D000200 6.1e-06 54.3 56 46.4
FAN01G1756 Fragaria x ananassa HOM05D000334 ORTHO05D000200 6.1e-06 54.3 57 45.6
HanXRQChr14g0457991 Helianthus annuus HOM05D000334 ORTHO05D000200 6.1e-06 54.3 57 43.9
MD07G1198900 Malus domestica HOM05D000334 ORTHO05D000200 6.1e-06 54.3 57 45.6
MBI14_g31101_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 8.0e-06 53.9 54 40.7
MBI14_g35406_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 8.0e-06 53.9 54 40.7


User provided reference genes

Program Settings