Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 4.7e-94 347.8 171 100.0
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 1.0e-93 346.7 171 99.4
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 3.4e-92 341.7 171 97.1
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 1.9e-87 325.9 171 94.2
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.4e-82 309.7 171 87.1
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-81 306.2 162 92.6
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 4.2e-79 298.1 171 84.8
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 9.5e-79 297.0 171 84.2
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 1.2e-76 290.0 160 86.2
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 4.4e-76 288.1 171 81.9
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 9.8e-76 287.0 165 83.6
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 1.1e-74 283.5 171 81.3
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 5.0e-72 274.6 172 79.7
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 3.3e-71 271.9 173 79.2
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 7.3e-71 270.8 172 78.5
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.9e-67 258.8 165 75.8
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 5.8e-52 208.0 169 66.9
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 9.9e-52 207.2 169 67.5
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 3.7e-51 205.3 170 65.3
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.1e-50 203.8 170 64.7
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 2.4e-50 202.6 170 64.7
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 3.2e-50 202.2 161 67.7
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 7.1e-50 201.1 167 64.7
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 7.1e-50 201.1 167 64.7
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 9.2e-50 200.7 169 66.3
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 4.6e-49 198.4 163 63.8
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 4.6e-49 198.4 175 62.3
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 4.6e-49 198.4 163 63.8
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 7.8e-49 197.6 163 65.0
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.7e-48 196.4 175 62.9
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 5.1e-48 194.9 163 65.0
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 3.3e-47 192.2 169 63.3
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 2.0e-44 183.0 140 66.4
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 9.9e-44 180.6 96 86.5
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.1e-42 177.2 160 58.8
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.4e-42 174.9 158 59.5
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.2e-41 173.7 153 62.7
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.9e-40 168.7 133 63.2
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 8.7e-40 167.5 156 60.9
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 1.3e-38 163.7 135 62.2
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 4.8e-38 161.8 128 63.3
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 8.1e-38 161.0 128 63.3
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-36 157.1 158 55.1
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 1.2e-36 157.1 133 60.2
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 4.4e-36 155.2 152 56.6
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 4.4e-36 155.2 152 56.6
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 4.4e-36 155.2 152 56.6
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 9.9e-36 154.1 153 56.9
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 9.9e-36 154.1 153 56.9
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 9.9e-36 154.1 153 56.9
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 9.9e-36 154.1 153 56.9
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 9.9e-36 154.1 153 56.9
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 6.4e-35 151.4 158 54.4
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 9.3e-34 147.5 153 54.9
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.6e-33 146.7 155 52.9
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 1.5e-31 140.2 146 54.1
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 3.3e-31 139.0 98 69.4
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 9.9e-28 127.5 139 47.5
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.3e-27 127.1 139 46.8
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.2e-27 126.3 142 47.9
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 4.9e-27 125.2 142 46.5
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 8.4e-27 124.4 139 48.9
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.1e-26 124.0 140 48.6
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 1.4e-26 123.6 144 44.4
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 1.9e-26 123.2 137 47.4
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 4.6e-25 118.6 171 40.9
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 4.6e-25 118.6 176 40.9
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 6.0e-25 118.2 165 45.5
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 6.0e-25 118.2 137 46.0
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.3e-24 117.1 135 45.9
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 1.8e-24 116.7 174 40.8
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 3.0e-24 115.9 165 42.4
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 3.0e-24 115.9 147 40.8
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 3.9e-24 115.5 141 44.0
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 3.9e-24 115.5 141 44.0
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 5.1e-24 115.2 135 47.4
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 6.7e-24 114.8 143 46.9
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 6.7e-24 114.8 167 41.3
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 8.7e-24 114.4 153 41.2
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 8.7e-24 114.4 135 45.2
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 8.7e-24 114.4 169 41.4
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.1e-23 114.0 151 40.4
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.5e-23 113.6 174 41.4
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.5e-23 113.6 152 41.4
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 2.5e-23 112.8 171 42.7
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 2.5e-23 112.8 156 40.4
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 2.5e-23 112.8 166 41.6
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 3.3e-23 112.5 169 40.2
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 3.3e-23 112.5 144 42.4
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 4.3e-23 112.1 159 41.5
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 4.3e-23 112.1 168 40.5
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 4.3e-23 112.1 137 46.0
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 5.6e-23 111.7 173 41.6
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 5.6e-23 111.7 179 40.2
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 7.4e-23 111.3 172 41.9
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.3e-22 110.5 144 42.4
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.6e-22 110.2 144 45.1
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 1.6e-22 110.2 141 43.3
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.1e-22 109.8 165 42.4
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 2.8e-22 109.4 165 37.6
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 2.8e-22 109.4 158 41.8
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.8e-22 109.4 140 41.4
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 3.7e-22 109.0 146 43.2
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 3.7e-22 109.0 132 45.5
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 3.7e-22 109.0 161 42.2
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 3.7e-22 109.0 161 39.1
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.8e-22 108.6 164 39.6
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 4.8e-22 108.6 173 40.5
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.8e-22 108.6 141 45.4
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 4.8e-22 108.6 132 47.7
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 6.2e-22 108.2 171 40.4
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 6.2e-22 108.2 171 40.4
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 8.1e-22 107.8 173 39.9
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 8.1e-22 107.8 170 40.6
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 8.1e-22 107.8 144 42.4
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 8.1e-22 107.8 131 46.6
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.1e-21 107.5 141 40.4
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.1e-21 107.5 131 46.6
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.4e-21 107.1 141 43.3
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 1.4e-21 107.1 143 43.4
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 1.4e-21 107.1 162 39.5
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 1.8e-21 106.7 123 46.3
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 1.8e-21 106.7 160 38.1
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 2.4e-21 106.3 137 43.1
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 5.3e-21 105.1 145 39.3
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 5.3e-21 105.1 139 41.0
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 6.9e-21 104.8 147 44.2
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 6.9e-21 104.8 145 41.4
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 6.9e-21 104.8 168 41.1
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 9.0e-21 104.4 136 41.2
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 9.0e-21 104.4 140 42.9
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 9.0e-21 104.4 177 37.9
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 1.2e-20 104.0 146 45.9
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 1.5e-20 103.6 165 40.6
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.0e-20 103.2 164 40.2
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.6e-20 102.8 133 40.6
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.6e-20 102.8 133 40.6
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 3.4e-20 102.4 148 40.5
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 3.4e-20 102.4 163 41.1
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 5.8e-20 101.7 146 42.5
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 5.8e-20 101.7 139 40.3
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 5.8e-20 101.7 136 42.6
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 7.6e-20 101.3 151 37.7
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.0e-19 100.9 136 41.9
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.3e-19 100.5 145 39.3
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 1.3e-19 100.5 136 42.6
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.3e-19 100.5 144 39.6
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.7e-19 100.1 144 41.7
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.2e-19 99.8 173 36.4
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.2e-19 99.8 173 36.4
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 2.9e-19 99.4 165 38.2
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 2.9e-19 99.4 145 37.9
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 2.9e-19 99.4 139 44.6
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.9e-19 98.6 152 40.1
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 4.9e-19 98.6 136 42.6
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 8.4e-19 97.8 164 36.0
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 8.4e-19 97.8 156 38.5
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.1e-18 97.4 175 36.0
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 1.4e-18 97.1 183 37.7
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 1.4e-18 97.1 167 38.3
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 1.9e-18 96.7 173 35.3
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 1.9e-18 96.7 167 37.7
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 2.5e-18 96.3 135 42.2
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 2.5e-18 96.3 137 42.3
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 2.5e-18 96.3 176 35.2
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 5.5e-18 95.1 168 38.1
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.2e-17 94.0 150 38.7
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.1e-17 93.2 91 50.5
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 3.5e-17 92.4 147 40.8
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 1.0e-16 90.9 164 36.0
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.8e-16 90.1 185 35.7
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 3.9e-16 89.0 124 42.7
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 3.3e-15 85.9 194 33.0
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.3e-14 84.0 102 49.0
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 3.7e-14 82.4 148 35.8
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.4e-13 80.5 170 37.1
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 9.0e-13 77.8 106 38.7
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 4.5e-12 75.5 111 38.7
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 3.5e-09 65.9 106 41.5
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 3.9e-08 62.4 65 55.4


User provided reference genes

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