Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 3.5e-43 177.9 93 100.0
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 3.5e-43 177.9 93 100.0
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 5.0e-42 174.1 93 97.8
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 5.0e-42 174.1 93 97.8
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 5.0e-42 174.1 93 97.8
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 2.1e-40 168.7 93 95.7
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.9e-37 158.3 93 89.2
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 8.3e-37 156.8 86 96.5
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 1.9e-36 155.6 93 88.2
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 2.4e-36 155.2 93 87.1
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 2.4e-36 155.2 93 87.1
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 2.4e-36 155.2 93 87.1
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 4.1e-36 154.5 93 87.1
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 5.4e-36 154.1 93 87.1
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 5.4e-36 154.1 93 87.1
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.6e-35 152.5 93 84.9
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.6e-35 152.5 93 84.9
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.6e-35 152.5 93 84.9
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.6e-35 152.5 93 86.0
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 7.8e-35 150.2 93 87.1
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.0e-34 149.8 93 83.9
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-33 145.6 93 84.9
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 7.3e-33 143.7 94 80.9
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 9.5e-33 143.3 91 82.4
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 1.2e-22 109.8 101 63.4
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 7.3e-17 90.5 101 58.4
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-16 89.7 89 60.7
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 3.6e-16 88.2 95 56.8
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.8e-15 85.9 94 57.4
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.4e-15 85.5 86 55.8
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.4e-15 85.5 94 58.5
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 5.2e-15 84.3 91 53.8
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 5.2e-15 84.3 91 52.7
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 1.5e-14 82.8 96 57.3
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.4e-14 81.6 95 52.6
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 3.4e-14 81.6 91 57.1
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 4.4e-14 81.3 100 50.0
BcaC08g45090 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-13 79.7 89 51.7
BolC6t37870H Brassica oleracea HOM05D003683 ORTHO05D004143 1.4e-12 76.3 102 49.0
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.9e-12 75.9 97 48.5
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 3.2e-12 75.1 102 51.0
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 4.2e-12 74.7 96 49.0
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.2e-12 74.7 96 49.0
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.2e-12 74.7 96 49.0
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.4e-12 74.3 95 49.5
THA.LOC104801993 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 5.4e-12 74.3 99 50.5
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 1.2e-11 73.2 75 60.0
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.6e-11 72.8 99 48.5
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.6e-11 72.8 73 57.5
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.1e-11 72.4 96 47.9
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 2.7e-11 72.0 96 52.1
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.5e-11 71.6 73 57.5
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 6.0e-11 70.9 97 50.5
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 6.0e-11 70.9 102 47.1
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.8e-11 70.5 96 51.0
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.0e-10 70.1 87 48.3
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.3e-10 69.7 64 59.4
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.3e-10 68.9 50 74.0
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.0e-10 68.6 77 51.9
BcaC08g45089 Brassica carinata HOM05D003683 ORTHO05D004143 3.9e-10 68.2 102 46.1
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.9e-10 68.2 86 53.5
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 3.9e-10 68.2 79 54.4
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 3.9e-10 68.2 86 48.8
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 6.6e-10 67.4 92 48.9
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 6.6e-10 67.4 64 59.4
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 6.6e-10 67.4 70 57.1
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 8.7e-10 67.0 68 55.9
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.1e-09 66.6 91 45.1
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.1e-09 66.6 88 43.2
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.5e-09 66.2 91 46.2
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 1.5e-09 66.2 47 72.3
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.5e-09 66.2 88 44.3
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 1.9e-09 65.9 97 44.3
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.9e-09 65.9 61 60.7
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 1.9e-09 65.9 64 60.9
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 2.5e-09 65.5 47 74.5
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 2.5e-09 65.5 47 74.5
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 2.5e-09 65.5 68 61.8
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 2.5e-09 65.5 95 46.3
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.5e-09 65.5 95 47.4
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.3e-09 65.1 64 51.6
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 3.3e-09 65.1 54 64.8
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.3e-09 65.1 72 54.2
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 4.3e-09 64.7 94 44.7
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 4.3e-09 64.7 73 52.1
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 4.3e-09 64.7 94 43.6
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 5.6e-09 64.3 92 46.7
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 5.6e-09 64.3 79 46.8
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 5.6e-09 64.3 47 68.1
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 7.3e-09 63.9 71 52.1
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 7.3e-09 63.9 69 55.1
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 7.3e-09 63.9 72 51.4
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 9.6e-09 63.5 76 50.0
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 9.6e-09 63.5 61 57.4
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 9.6e-09 63.5 100 43.0
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.3e-08 63.2 93 44.1
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 1.3e-08 63.2 49 61.2
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 1.6e-08 62.8 111 40.5
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.1e-08 62.4 69 55.1
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.1e-08 62.4 69 55.1
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 2.1e-08 62.4 88 43.2
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 2.1e-08 62.4 67 53.7
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.1e-08 62.4 75 57.3
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.8e-08 62.0 61 59.0
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 2.8e-08 62.0 101 41.6
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 3.6e-08 61.6 92 48.9
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.6e-08 61.6 65 56.9
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 3.6e-08 61.6 73 47.9
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 3.6e-08 61.6 91 45.1
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 3.6e-08 61.6 69 52.2
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 3.6e-08 61.6 75 53.3
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 3.6e-08 61.6 69 53.6
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 4.8e-08 61.2 105 44.8
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 4.8e-08 61.2 95 45.3
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 4.8e-08 61.2 72 51.4
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.2e-08 60.8 72 47.2
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 6.2e-08 60.8 60 55.0
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 6.2e-08 60.8 88 42.0
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 8.1e-08 60.5 63 58.7
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 8.1e-08 60.5 88 43.2
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 8.1e-08 60.5 88 43.2
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 8.1e-08 60.5 63 54.0
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.1e-07 60.1 66 51.5
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.1e-07 60.1 44 65.9
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-07 60.1 65 55.4
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-07 60.1 65 55.4
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.4e-07 59.7 93 43.0
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 1.4e-07 59.7 67 50.7
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 1.4e-07 59.7 103 39.8
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.8e-07 59.3 68 50.0
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 2.4e-07 58.9 97 42.3
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 2.4e-07 58.9 71 52.1
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.4e-07 58.9 68 51.5
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 3.1e-07 58.5 89 42.7
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 3.1e-07 58.5 64 51.6
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 4.0e-07 58.2 54 53.7
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 4.0e-07 58.2 88 40.9
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 4.0e-07 58.2 70 47.1
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 4.0e-07 58.2 53 56.6
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 5.3e-07 57.8 41 70.7
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.3e-07 57.8 70 51.4
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 5.3e-07 57.8 97 40.2
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 5.3e-07 57.8 72 50.0
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.9e-07 57.4 61 55.7
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 6.9e-07 57.4 72 50.0
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 6.9e-07 57.4 94 40.4
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 9.0e-07 57.0 66 47.0
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 1.2e-06 56.6 59 50.8
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.2e-06 56.6 98 41.8
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.2e-06 56.6 61 50.8
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.5e-06 56.2 86 43.0
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 1.5e-06 56.2 54 55.6
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.5e-06 56.2 86 43.0
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.5e-06 56.2 60 51.7
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 2.6e-06 55.5 72 47.2
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.4e-06 55.1 45 62.2
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 3.4e-06 55.1 63 49.2
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 4.4e-06 54.7 90 41.1
Lsat_1_v5_gn_2_24580 Lactuca sativa HOM05D003360 ORTHO05D003759 4.4e-06 54.7 56 57.1
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 4.4e-06 54.7 92 42.4
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 5.8e-06 54.3 85 47.1
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 5.8e-06 54.3 43 65.1
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 5.8e-06 54.3 63 49.2
Lsat_1_v5_gn_6_24141 Lactuca sativa HOM05D003360 ORTHO05D003759 7.6e-06 53.9 56 55.4
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 7.6e-06 53.9 97 39.2
MSTRG.5836 Avicennia marina HOM05D003360 ORTHO05D003759 9.9e-06 53.5 46 58.7
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 9.9e-06 53.5 86 43.0
Sc20g0006220 Simmondsia chinensis HOM05D003360 ORTHO05D003759 9.9e-06 53.5 43 65.1
HPP92_000039 Vanilla planifolia HOM05D003360 ORTHO05D003759 9.9e-06 53.5 46 60.9
HPP92_012635 Vanilla planifolia HOM05D003360 ORTHO05D003759 9.9e-06 53.5 46 60.9


User provided reference genes

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