Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 0.0e+00 1194.9 608 100.0
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 0.0e+00 1172.5 608 98.5
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 0.0e+00 1116.7 610 94.9
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 0.0e+00 1104.4 605 94.5
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 0.0e+00 1104.4 605 94.5
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 0.0e+00 1079.7 620 91.0
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 7.3e-299 1030.0 625 86.2
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 9.5e-299 1029.6 624 86.7
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.8e-281 972.2 603 83.6
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.2e-270 934.9 610 81.5
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 3.6e-266 921.4 608 79.1
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.5e-259 899.4 610 76.9
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 3.1e-257 891.7 533 85.9
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.2e-256 889.8 614 75.9
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.5e-256 889.4 610 75.9
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 9.9e-256 886.7 607 76.3
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 3.9e-252 874.8 613 74.4
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 8.7e-252 873.6 610 74.9
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 2.5e-251 872.1 610 74.8
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 4.3e-251 871.3 615 75.0
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 9.6e-251 870.2 619 74.0
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.6e-250 869.4 613 73.9
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.1e-250 869.0 610 74.4
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.5e-248 862.8 610 73.9
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 2.5e-246 855.5 610 73.4
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 2.5e-246 855.5 610 73.4
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 4.6e-245 851.3 625 71.8
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 3.3e-243 845.1 592 75.2
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 4.8e-242 841.3 589 74.0
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 4.1e-241 838.2 620 70.5
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 4.1e-241 838.2 582 74.7
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 5.3e-241 837.8 586 74.2
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.3e-239 833.2 625 70.9
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.1e-238 830.1 595 73.8
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.1e-238 830.1 625 70.9
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.4e-238 829.7 610 71.8
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 9.3e-238 827.0 608 72.2
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 1.6e-237 826.2 581 74.4
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 2.1e-237 825.9 581 74.4
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 3.6e-237 825.1 609 71.8
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 6.1e-237 824.3 626 70.4
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 7.9e-237 823.9 619 70.1
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 7.9e-237 823.9 627 70.0
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.3e-236 822.4 591 72.6
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 6.7e-236 820.8 623 70.1
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 2.5e-235 818.9 585 72.8
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 5.7e-235 817.8 608 70.9
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 7.4e-235 817.4 612 70.3
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 7.4e-235 817.4 598 72.1
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 9.7e-235 817.0 588 72.8
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 9.7e-235 817.0 605 70.9
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.3e-234 816.6 587 72.4
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.6e-234 816.2 614 71.0
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.8e-234 815.5 602 71.8
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 6.3e-234 814.3 617 70.8
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 1.8e-233 812.8 622 69.8
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.4e-233 812.4 624 70.0
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 3.1e-233 812.0 595 72.8
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 3.1e-233 812.0 587 72.1
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 4.1e-233 811.6 612 70.9
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 6.9e-233 810.8 624 69.4
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 9.1e-233 810.4 624 69.6
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 9.1e-233 810.4 622 69.1
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.2e-232 810.1 591 72.6
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 1.2e-232 810.1 582 72.7
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.2e-232 810.1 619 69.0
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.5e-232 809.7 624 69.4
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.6e-232 808.9 595 72.3
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 3.4e-232 808.5 596 71.8
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.4e-232 808.5 594 72.2
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.9e-232 807.7 610 69.5
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 7.7e-232 807.4 597 70.7
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 1.0e-231 807.0 577 73.8
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 1.3e-231 806.6 604 70.7
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.3e-231 806.6 625 69.6
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 2.2e-231 805.8 578 72.3
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 2.2e-231 805.8 592 72.3
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 5.0e-231 804.7 606 69.6
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 6.5e-231 804.3 582 71.3
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 8.5e-231 803.9 593 72.2
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.2e-230 802.0 578 72.3
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.2e-230 802.0 610 70.0
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 4.2e-230 801.6 577 72.3
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 7.2e-230 800.8 548 73.9
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.2e-229 800.0 577 72.8
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.6e-229 799.7 577 73.0
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 7.9e-229 797.3 590 70.7
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 7.9e-229 797.3 577 72.8
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 7.9e-229 797.3 616 69.0
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 7.9e-229 797.3 614 69.4
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 1.0e-228 797.0 577 71.9
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.8e-228 796.2 618 68.6
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 2.3e-228 795.8 581 71.4
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 5.1e-228 794.7 580 72.1
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 2.0e-227 792.7 577 71.6
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 7.4e-227 790.8 586 70.6
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 2.2e-226 789.3 582 71.1
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 2.2e-226 789.3 577 71.4
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 4.8e-226 788.1 542 75.5
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 4.1e-225 785.0 616 67.5
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 4.5e-224 781.6 582 70.4
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 5.9e-224 781.2 604 69.0
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 3.6e-221 771.9 582 69.1
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.4e-220 770.0 656 63.7
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 6.7e-220 767.7 582 69.2
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 8.8e-220 767.3 576 69.4
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 5.7e-219 764.6 594 67.3
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 9.1e-217 757.3 527 72.5
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.0e-216 756.1 555 72.3
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 2.0e-216 756.1 547 70.4
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 6.5e-215 751.1 573 68.8
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 6.1e-213 744.6 619 63.7
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 7.5e-211 737.6 604 65.4
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 9.7e-211 737.3 582 66.7
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 1.2e-208 730.3 548 69.9
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 1.2e-208 730.3 548 69.9
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.9e-207 725.7 591 65.5
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 4.2e-206 721.8 598 65.1
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 2.7e-205 719.2 571 68.1
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.8e-204 716.5 575 65.6
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 4.0e-204 715.3 559 66.2
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.7e-202 709.9 602 64.5
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.4e-201 706.1 526 66.7
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 9.1e-201 704.1 571 62.7
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 7.7e-200 701.0 519 68.8
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.7e-197 691.8 520 67.7
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 3.4e-195 685.6 565 66.0
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 8.3e-194 681.0 445 77.3
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 3.1e-193 679.1 591 61.8
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.6e-192 676.8 388 88.7
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.0e-188 664.1 581 62.1
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.7e-187 658.3 566 61.7
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.7e-186 656.8 561 62.4
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 2.2e-186 656.4 524 65.6
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 4.1e-185 652.1 425 77.9
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 5.9e-184 648.3 421 77.0
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-183 647.1 536 62.9
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 5.6e-182 641.7 419 77.3
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 7.3e-182 641.3 592 60.3
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.1e-180 636.0 496 66.3
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.2e-179 634.0 586 59.6
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 5.8e-179 631.7 517 64.2
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.8e-179 631.7 414 76.8
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 7.5e-179 631.3 528 62.5
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.8e-176 621.3 527 61.5
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.5e-155 553.9 583 51.1
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 5.8e-155 552.0 466 66.1
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.1e-152 543.5 483 57.6
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.4e-137 494.2 530 53.8
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 9.7e-126 454.9 342 69.6
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.8e-125 452.6 463 55.5
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.3e-122 444.5 331 72.2
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.7e-117 426.4 319 70.8
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 1.5e-73 281.6 171 84.8
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.5e-73 281.6 171 83.6
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 3.1e-71 273.9 168 83.9
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.0e-70 271.2 168 83.3
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 5.8e-70 269.6 158 84.8
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.5e-65 255.0 145 89.0
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 3.8e-37 160.6 124 67.7
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 3.5e-35 154.1 98 79.6
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.4e-23 114.8 94 60.6
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.9e-21 107.1 312 27.6
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 6.4e-21 106.7 88 58.0
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.2e-19 102.4 60 85.0
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 6.7e-18 96.7 141 44.0
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.5e-17 94.7 273 28.9
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.3e-15 87.0 185 35.1
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.0e-15 86.3 251 30.3
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.7e-13 82.0 165 32.7
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.4e-12 79.0 70 68.6
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 7.9e-11 73.2 97 47.4
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 1.9e-09 68.6 86 46.5
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 6.3e-08 63.5 102 43.1
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 4.1e-07 60.8 60 48.3


User provided reference genes

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