Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p04140 Brassica napus HOM05D007315 ORTHO05D008940 1.8e-282 975.3 525 100.0
BraA05t19400Z Brassica rapa HOM05D007315 ORTHO05D008940 1.2e-252 876.3 508 94.9
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 3.3e-223 778.5 521 84.6
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 6.0e-209 731.1 528 81.4
BcaC02g12347 Brassica carinata HOM05D007315 ORTHO05D008940 1.6e-190 669.8 528 77.3
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 3.6e-169 599.0 618 63.1
Thhalv10001359m.g Eutrema salsugineum HOM05D007315 ORTHO05D008940 1.7e-166 590.1 627 64.1
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 8.8e-160 567.8 626 60.9
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 3.7e-158 562.4 621 62.2
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 1.8e-157 560.1 627 61.1
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 2.8e-145 519.6 599 59.3
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 1.0e-83 315.1 664 41.1
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 6.1e-76 289.3 677 39.7
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 6.8e-43 179.5 554 32.9
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 1.7e-41 174.9 672 31.1
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 1.7e-41 174.9 684 30.6
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 1.1e-40 172.2 609 31.4
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 3.1e-40 170.6 701 30.5
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 4.5e-39 166.8 494 34.0
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.3e-38 165.2 504 34.1
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 1.3e-38 165.2 622 33.4
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 1.2e-36 158.7 687 30.4
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 3.6e-36 157.1 525 33.1
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 6.8e-35 152.9 593 32.0
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 6.8e-35 152.9 698 29.5
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 8.8e-35 152.5 355 37.5
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 3.4e-34 150.6 503 33.4
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 3.4e-34 150.6 503 33.4
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 3.4e-34 150.6 627 29.7
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 5.7e-34 149.8 521 32.6
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.7e-33 148.3 471 33.8
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 4.9e-33 146.7 578 30.3
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 6.3e-33 146.4 506 33.4
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 8.3e-33 146.0 491 33.0
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 1.1e-32 145.6 516 32.9
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 7.0e-32 142.9 670 28.7
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 7.0e-32 142.9 623 28.7
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 3.5e-31 140.6 677 28.2
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 2.3e-30 137.9 476 31.3
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 4.3e-29 133.7 462 33.3
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 5.6e-29 133.3 467 31.9
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 7.3e-29 132.9 497 31.0
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 7.3e-29 132.9 535 32.1
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 9.5e-29 132.5 448 31.7
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 2.1e-28 131.3 677 29.1
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 2.1e-28 131.3 448 31.9
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 2.8e-28 131.0 336 36.6
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 3.6e-28 130.6 638 28.7
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 4.7e-28 130.2 614 30.5
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.5e-26 125.2 304 36.2
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 2.0e-26 124.8 492 29.7
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 3.4e-26 124.0 538 28.8
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 1.7e-25 121.7 509 30.5
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 2.9e-25 120.9 540 30.6
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 1.1e-24 119.0 494 29.8
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 1.4e-24 118.6 620 28.7
PGR042G2132 Punica granatum HOM05D007315 ORTHO05D008940 2.4e-24 117.9 489 31.7
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 9.2e-24 115.9 288 35.1
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 9.2e-24 115.9 627 28.7
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 2.0e-23 114.8 485 29.9
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 2.0e-23 114.8 549 30.6
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 4.6e-23 113.6 603 28.4
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 1.0e-22 112.5 338 34.9
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 1.7e-22 111.7 539 30.2
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 8.6e-22 109.4 540 30.4
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 2.5e-21 107.8 311 34.7
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 3.3e-21 107.5 448 31.0
QL10p064445 Quercus lobata HOM05D007315 ORTHO05D008940 3.3e-21 107.5 325 34.2
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 1.6e-20 105.1 517 30.4
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 2.1e-20 104.8 497 29.0
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 8.0e-20 102.8 528 29.5
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 8.0e-20 102.8 550 28.7
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 1.4e-19 102.1 637 28.1
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 3.1e-19 100.9 420 30.2
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 8.9e-19 99.4 414 29.5
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 1.5e-18 98.6 474 29.7
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 2.0e-18 98.2 450 29.6
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 2.6e-18 97.8 397 29.7
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 1.7e-17 95.1 523 29.8
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 2.2e-17 94.7 304 32.9
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 3.7e-17 94.0 479 30.3
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 4.9e-17 93.6 587 28.3
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 4.9e-17 93.6 551 29.4
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 1.9e-16 91.7 561 28.5
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 2.4e-16 91.3 256 33.2
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 2.4e-16 91.3 540 25.9
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 6.0e-15 86.7 386 29.5
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 1.9e-13 81.6 322 31.7
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 7.3e-13 79.7 326 30.4
MSTRG.24547 Avicennia marina HOM05D007315 ORTHO05D008940 2.1e-12 78.2 365 30.4
Migut.N03024 Erythranthe guttata HOM05D007315 ORTHO05D008940 2.1e-12 78.2 543 26.7
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 6.2e-12 76.6 173 35.8
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 2.0e-10 71.6 300 29.3
SalBow3G0669 Salvia bowleyana HOM05D007315 ORTHO05D008940 7.5e-10 69.7 472 29.0
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 2.2e-09 68.2 303 29.4
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 4.9e-09 67.0 93 48.4
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 8.3e-09 66.2 317 31.9
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 4.1e-08 63.9 175 36.0
SGA_v2.0_scaffold19G08894 Striga asiatica HOM05D007315 ORTHO05D008940 4.1e-08 63.9 307 26.4
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 2.3e-06 58.2 528 26.1
SGA_v2.0_scaffold25G11016 Striga asiatica HOM05D007315 ORTHO05D008940 8.6e-06 56.2 530 25.7


User provided reference genes

Program Settings