Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 1.1e-156 556.6 287 100.0
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 3.3e-153 545.0 287 99.0
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 1.2e-145 520.0 288 96.5
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 2.2e-144 515.8 288 95.8
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 2.8e-139 498.8 289 93.4
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 1.4e-130 469.9 294 86.7
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 3.1e-122 442.2 291 84.9
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 3.1e-122 442.2 291 84.9
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 4.0e-122 441.8 291 85.9
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 2.6e-121 439.1 281 86.1
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 4.4e-121 438.3 291 83.8
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 2.9e-120 435.6 298 81.2
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 2.1e-118 429.5 292 82.5
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 8.6e-117 424.1 297 81.8
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 6.2e-115 417.9 294 81.6
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 1.4e-114 416.8 299 76.6
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 2.4e-111 406.0 290 79.7
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 9.2e-111 404.1 299 75.9
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 4.6e-110 401.7 263 83.7
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 7.8e-110 401.0 298 74.2
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 5.8e-105 384.8 301 72.8
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.4e-103 379.4 221 89.1
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.7e-101 373.2 299 71.2
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 1.5e-97 360.1 292 71.2
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.5e-97 360.1 290 71.4
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 2.6e-97 359.4 289 72.3
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 1.3e-96 357.1 287 70.7
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 2.9e-96 355.9 287 70.7
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 4.2e-95 352.1 209 86.6
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 5.4e-95 351.7 287 70.4
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 3.5e-94 349.0 287 69.7
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 3.5e-94 349.0 287 69.7
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 3.5e-94 349.0 301 67.4
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 3.5e-94 349.0 285 71.9
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 4.6e-94 348.6 288 70.1
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 6.0e-94 348.2 297 68.0
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 6.0e-94 348.2 193 90.7
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 6.0e-94 348.2 300 68.0
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 7.8e-94 347.8 287 67.9
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 1.0e-93 347.4 298 67.1
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.3e-93 347.1 287 69.7
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.7e-93 346.7 309 66.3
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.7e-93 346.7 289 69.9
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 1.7e-93 346.7 292 68.2
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 2.3e-93 346.3 255 73.7
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.9e-92 343.2 215 81.9
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 7.3e-92 341.3 287 69.3
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 1.3e-91 340.5 191 88.5
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 1.3e-91 340.5 252 72.2
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 1.6e-91 340.1 215 81.9
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 2.1e-91 339.7 195 87.7
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 2.1e-91 339.7 195 87.7
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.1e-91 339.7 217 81.1
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 2.1e-91 339.7 297 66.7
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 2.1e-91 339.7 227 77.5
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.8e-91 339.3 278 69.4
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 3.6e-91 339.0 259 70.7
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 3.6e-91 339.0 215 81.4
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 3.6e-91 339.0 220 81.4
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 3.6e-91 339.0 255 73.7
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 4.8e-91 338.6 217 80.6
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 6.2e-91 338.2 293 68.9
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 6.2e-91 338.2 261 71.6
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 6.2e-91 338.2 193 88.1
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 8.1e-91 337.8 195 88.7
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 1.4e-90 337.0 290 68.6
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 1.4e-90 337.0 191 88.5
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.4e-90 337.0 190 88.9
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.4e-90 337.0 286 68.9
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.8e-90 336.7 291 67.4
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.8e-90 336.7 193 89.1
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 2.4e-90 336.3 215 80.0
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 5.3e-90 335.1 263 69.6
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 6.9e-90 334.7 193 87.6
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 6.9e-90 334.7 296 65.2
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 9.0e-90 334.3 192 88.5
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 1.5e-89 333.6 282 68.4
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 2.6e-89 332.8 285 67.0
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 2.6e-89 332.8 281 68.0
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 2.6e-89 332.8 281 68.0
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 3.4e-89 332.4 294 63.3
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 3.4e-89 332.4 267 71.2
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 3.4e-89 332.4 233 75.1
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 3.4e-89 332.4 185 88.1
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 9.9e-89 330.9 300 66.3
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 1.3e-88 330.5 183 89.6
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 1.3e-88 330.5 195 84.1
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.2e-88 329.7 283 67.8
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.9e-88 329.3 287 63.1
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 2.9e-88 329.3 195 85.1
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 6.4e-88 328.2 285 67.0
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 8.4e-88 327.8 269 69.5
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 1.4e-87 327.0 260 68.8
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.4e-87 327.0 289 65.7
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 5.4e-87 325.1 303 65.3
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 5.4e-87 325.1 226 74.8
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 7.1e-87 324.7 262 69.5
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.2e-86 323.9 215 77.7
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 1.2e-86 323.9 206 79.1
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 1.6e-86 323.6 254 71.7
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 6.0e-86 321.6 203 79.8
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.8e-85 320.1 281 65.5
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 5.1e-85 318.5 287 63.4
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.5e-84 317.0 217 79.3
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 4.3e-84 315.5 276 66.3
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 6.2e-83 311.6 187 84.0
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 9.0e-82 307.8 184 81.5
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.6e-81 306.2 184 82.6
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 3.4e-81 305.8 242 69.4
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 1.8e-77 293.5 295 60.3
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 1.5e-76 290.4 155 94.2
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 1.5e-76 290.4 245 67.3
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.4e-74 283.9 194 77.3
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 4.0e-74 282.3 157 89.2
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 4.8e-67 258.8 240 62.9
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 6.3e-67 258.5 259 61.0
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 3.1e-66 256.1 217 66.4
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 6.9e-66 255.0 246 63.8
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 4.5e-65 252.3 153 83.7
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 7.7e-65 251.5 134 94.0
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 7.7e-65 251.5 160 76.2
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 2.1e-62 243.4 248 60.5
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 2.3e-61 240.0 193 63.2
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 5.7e-60 235.3 191 70.7
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 7.4e-60 235.0 160 70.0
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 2.0e-57 226.9 206 60.7
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 5.1e-53 212.2 121 87.6
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 1.1e-47 194.5 161 67.7
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 1.2e-46 191.0 120 78.3
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 1.9e-39 167.2 90 93.3
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 2.7e-38 163.3 89 89.9
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.2e-32 143.7 188 48.4
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 8.5e-32 141.7 160 48.8
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.2e-27 127.1 174 51.1
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 1.7e-24 117.5 78 71.8
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 5.0e-24 115.9 177 46.3
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 4.2e-23 112.8 78 69.2
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 7.0e-18 95.5 130 43.8
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 7.8e-17 92.0 78 65.4
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.9e-07 60.8 44 59.1


User provided reference genes

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