Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 4.6e-120 434.5 206 100.0
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 4.6e-120 434.5 206 100.0
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 2.0e-115 419.1 206 96.1
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 2.0e-115 419.1 206 96.1
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 1.2e-109 399.8 198 96.0
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 3.4e-99 365.2 200 87.0
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 3.0e-95 352.1 180 92.2
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 9.3e-89 330.5 201 77.6
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.4e-81 306.6 196 72.4
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 7.1e-81 304.3 193 73.6
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 9.3e-81 303.9 196 72.4
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.1e-80 302.8 192 74.5
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.3e-79 300.1 196 73.0
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.9e-78 296.2 200 70.5
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.5e-78 295.8 201 69.2
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-76 289.7 198 69.2
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 4.1e-76 288.5 198 69.2
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 5.3e-76 288.1 197 72.6
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 2.0e-75 286.2 198 69.2
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 2.0e-75 286.2 198 69.2
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 7.6e-75 284.3 198 68.2
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.2e-73 278.9 201 64.7
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 3.6e-72 275.4 188 70.7
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 2.8e-69 265.8 181 69.1
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 6.9e-68 261.2 196 61.2
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 9.1e-68 260.8 202 58.4
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 1.2e-67 260.4 196 60.2
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 2.0e-67 259.6 193 60.6
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 2.6e-67 259.2 195 61.0
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 3.4e-67 258.8 195 57.9
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 4.5e-67 258.5 193 62.2
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 1.3e-66 256.9 196 58.7
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 1.3e-66 256.9 196 61.2
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 2.9e-66 255.8 200 59.0
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 2.9e-66 255.8 196 58.7
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 5.0e-66 255.0 196 58.7
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-65 253.8 193 59.6
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-65 253.8 193 59.6
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 1.4e-65 253.4 193 59.6
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 1.9e-65 253.1 193 59.6
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 1.9e-65 253.1 196 59.7
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 1.9e-65 253.1 196 57.7
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 3.2e-65 252.3 195 57.9
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 4.2e-65 251.9 193 59.1
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 5.5e-65 251.5 193 59.1
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 7.2e-65 251.1 191 57.6
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 7.2e-65 251.1 193 59.1
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 9.4e-65 250.8 193 58.0
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.6e-64 250.0 193 59.1
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 2.1e-64 249.6 196 57.1
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.1e-64 249.6 193 59.6
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 3.6e-64 248.8 196 56.1
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 6.1e-64 248.1 193 58.5
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.4e-63 246.9 193 58.5
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 1.4e-63 246.9 193 58.5
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 1.4e-63 246.9 193 56.0
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 1.8e-63 246.5 192 56.8
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.8e-63 246.5 193 58.5
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 1.8e-63 246.5 193 58.5
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 3.0e-63 245.7 193 55.4
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 3.0e-63 245.7 192 59.4
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 3.0e-63 245.7 193 57.0
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 3.0e-63 245.7 193 55.4
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 3.0e-63 245.7 182 62.1
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 3.9e-63 245.4 192 57.3
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 5.1e-63 245.0 196 54.1
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 6.7e-63 244.6 193 57.5
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 1.1e-62 243.8 193 54.9
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.1e-62 243.8 193 56.5
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 1.1e-62 243.8 196 56.1
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 1.5e-62 243.4 194 56.2
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 1.5e-62 243.4 196 55.1
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 2.0e-62 243.0 196 56.1
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 3.3e-62 242.3 193 57.5
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 3.3e-62 242.3 194 55.7
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 4.4e-62 241.9 214 54.2
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 4.4e-62 241.9 200 54.0
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 5.7e-62 241.5 198 55.1
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 5.7e-62 241.5 191 57.1
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 5.7e-62 241.5 193 56.5
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 7.4e-62 241.1 198 54.5
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 7.4e-62 241.1 195 56.9
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 7.4e-62 241.1 192 55.7
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 1.3e-61 240.4 193 53.4
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.7e-61 240.0 185 58.9
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 1.7e-61 240.0 192 55.7
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 4.8e-61 238.4 194 56.7
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 4.8e-61 238.4 194 55.7
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 6.3e-61 238.0 191 56.5
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 6.3e-61 238.0 196 54.1
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 8.2e-61 237.7 192 55.2
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 1.1e-60 237.3 183 59.0
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 1.1e-60 237.3 192 55.7
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 1.8e-60 236.5 193 55.4
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 3.1e-60 235.7 182 57.7
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 4.1e-60 235.3 183 58.5
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 6.9e-60 234.6 183 57.9
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.2e-59 233.8 194 53.6
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.5e-59 233.4 193 53.4
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 5.9e-59 231.5 183 57.4
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 5.9e-59 231.5 191 56.0
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 7.7e-59 231.1 182 57.1
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 1.3e-58 230.3 193 53.9
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-57 227.3 194 55.2
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 1.4e-57 226.9 187 54.5
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.9e-57 226.5 191 56.5
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 3.2e-57 225.7 192 54.2
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 7.2e-57 224.6 171 60.8
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 9.4e-57 224.2 191 55.0
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-56 223.4 252 45.2
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 6.1e-56 221.5 193 52.8
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.4e-55 220.3 183 54.6
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 3.0e-55 219.2 194 53.6
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 5.2e-55 218.4 202 51.0
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 6.7e-55 218.0 180 55.0
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 1.5e-54 216.9 188 52.1
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.7e-53 213.4 217 47.5
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 4.8e-53 211.8 188 50.5
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 9.1e-52 207.6 194 50.0
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 9.1e-52 207.6 208 49.0
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 1.2e-51 207.2 192 51.0
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 2.6e-51 206.1 228 47.4
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 3.8e-50 202.2 178 55.1
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 1.1e-49 200.7 195 48.2
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 2.5e-49 199.5 196 51.0
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 8.0e-48 194.5 181 50.8
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.5e-46 190.3 179 49.7
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 2.6e-46 189.5 193 48.2
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 3.3e-46 189.1 138 58.7
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 4.4e-46 188.7 140 56.4
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 9.7e-46 187.6 196 46.4
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.3e-45 187.2 163 51.5
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 5.3e-44 181.8 152 56.6
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 1.2e-40 170.6 125 59.2
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.2e-40 170.6 119 67.2
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 1.8e-39 166.8 145 52.4
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 3.0e-39 166.0 192 43.8
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 2.6e-38 162.9 163 52.1
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 5.7e-38 161.8 167 45.5
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 1.8e-36 156.8 113 61.1
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 1.7e-29 133.7 173 46.8
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 1.7e-29 133.7 173 46.8
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 4.9e-29 132.1 173 46.2
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 4.9e-29 132.1 209 35.9
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 2.0e-27 126.7 181 45.3
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 2.9e-26 122.9 201 36.3
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 7.3e-25 118.2 96 52.1
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 9.5e-25 117.9 182 37.4
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.5e-22 110.5 72 77.8
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 9.8e-22 107.8 90 55.6
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.8e-20 103.6 71 57.7
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.4e-20 102.1 74 58.1
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 1.2e-19 100.9 73 53.4
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 1.6e-19 100.5 74 52.7
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 8.6e-18 94.7 76 61.8
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.2e-16 90.9 60 56.7
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 3.6e-16 89.4 152 38.8
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 4.7e-16 89.0 151 39.1
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 8.9e-15 84.7 75 58.7
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.5e-14 84.0 78 55.1
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 5.8e-14 82.0 54 59.3
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 7.0e-12 75.1 46 60.9
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 6.2e-08 62.0 52 53.8
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 2.0e-06 57.0 47 57.4
Cfa025661 Carpinus fangiana HOM05D004249 ORTHO05D005015 4.4e-06 55.8 133 32.3
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 9.9e-06 54.7 44 56.8


User provided reference genes

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