Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.1e-110 403.3 199 100.0
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 4.3e-99 364.8 184 97.3
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 2.9e-95 352.1 177 97.7
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 4.2e-94 348.2 173 97.7
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 4.2e-94 348.2 173 97.7
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 3.2e-86 322.0 189 85.7
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 6.7e-84 314.3 185 83.8
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 1.5e-83 313.2 192 81.8
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 3.7e-82 308.5 185 83.8
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 8.1e-82 307.4 185 83.2
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 8.1e-82 307.4 185 83.2
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 1.8e-81 306.2 184 82.6
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 5.3e-81 304.7 186 79.6
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 5.3e-81 304.7 185 82.7
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 7.2e-70 267.7 182 73.1
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 1.6e-69 266.5 180 73.3
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 2.7e-69 265.8 173 71.7
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 6.1e-69 264.6 188 69.7
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 3.9e-68 261.9 189 67.2
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 5.1e-68 261.5 187 68.4
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 6.7e-68 261.2 185 69.2
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 1.5e-67 260.0 184 68.5
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 1.5e-67 260.0 177 71.2
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 2.5e-67 259.2 168 73.8
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 3.3e-67 258.8 185 74.1
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 4.3e-67 258.5 185 68.1
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 4.3e-67 258.5 188 67.6
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 4.3e-67 258.5 185 68.6
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 5.7e-67 258.1 186 67.7
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 9.7e-67 257.3 182 67.0
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 1.3e-66 256.9 192 64.6
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 1.3e-66 256.9 184 67.9
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 1.3e-66 256.9 189 65.6
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 1.6e-66 256.5 183 70.5
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 1.6e-66 256.5 188 67.6
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 2.8e-66 255.8 194 64.9
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 2.8e-66 255.8 183 68.9
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 3.7e-66 255.4 187 66.3
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 3.7e-66 255.4 182 67.6
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 3.7e-66 255.4 189 65.1
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 3.7e-66 255.4 197 66.5
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 6.3e-66 254.6 172 70.9
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 8.2e-66 254.2 170 71.8
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 8.2e-66 254.2 182 66.5
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 1.1e-65 253.8 189 64.6
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 1.4e-65 253.4 170 71.2
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 1.8e-65 253.1 190 64.7
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 1.8e-65 253.1 184 64.7
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 1.8e-65 253.1 179 67.6
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 2.4e-65 252.7 184 66.8
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 2.4e-65 252.7 181 67.4
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 2.4e-65 252.7 170 70.6
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 3.1e-65 252.3 192 64.6
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 4.1e-65 251.9 191 64.4
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 4.1e-65 251.9 184 66.3
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 4.1e-65 251.9 184 66.3
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 5.3e-65 251.5 170 70.0
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 6.9e-65 251.1 183 66.1
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 6.9e-65 251.1 183 66.1
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 6.9e-65 251.1 192 64.1
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 9.1e-65 250.8 170 70.0
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 9.1e-65 250.8 167 73.7
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.5e-64 250.0 170 68.8
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 1.5e-64 250.0 184 63.6
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 2.0e-64 249.6 170 71.2
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 2.0e-64 249.6 192 64.1
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 2.6e-64 249.2 155 76.8
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 2.6e-64 249.2 170 71.8
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 3.4e-64 248.8 183 66.7
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 3.4e-64 248.8 170 69.4
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 4.5e-64 248.4 192 63.0
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 4.5e-64 248.4 192 64.1
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 4.5e-64 248.4 189 66.7
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 5.9e-64 248.1 170 71.2
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 7.7e-64 247.7 183 66.1
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 1.0e-63 247.3 171 68.4
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 1.0e-63 247.3 178 67.4
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.7e-63 246.5 192 62.5
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 2.2e-63 246.1 192 63.5
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 2.2e-63 246.1 185 63.8
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.9e-63 245.7 183 65.6
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 5.0e-63 245.0 192 63.5
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 5.0e-63 245.0 171 67.8
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 1.9e-62 243.0 171 67.3
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 1.9e-62 243.0 186 61.8
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 2.5e-62 242.7 167 67.1
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 2.5e-62 242.7 169 68.0
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 2.5e-62 242.7 173 64.2
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 2.5e-62 242.7 170 68.8
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 3.2e-62 242.3 171 67.8
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 5.5e-62 241.5 171 66.7
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 7.2e-62 241.1 170 68.8
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 7.2e-62 241.1 170 69.4
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.2e-61 240.4 170 68.8
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 1.0e-60 237.3 170 68.2
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 1.0e-60 237.3 177 65.5
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 5.1e-60 235.0 165 67.9
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 2.0e-59 233.0 172 66.3
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 1.3e-58 230.3 166 65.7
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 6.9e-57 224.6 203 56.2
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 3.4e-56 222.2 189 57.1
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 5.9e-56 221.5 163 65.0
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 6.5e-55 218.0 169 60.4
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 2.5e-54 216.1 167 66.5
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 1.6e-53 213.4 173 61.3
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 1.5e-51 206.8 123 75.6
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 7.0e-49 198.0 153 62.7
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 9.1e-49 197.6 169 59.2
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 5.9e-48 194.9 181 54.1
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.9e-47 192.6 123 74.0
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.8e-47 192.2 122 73.8
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 3.8e-47 192.2 149 63.1
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 3.2e-46 189.1 170 59.4
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 3.2e-46 189.1 165 57.6
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 5.2e-44 181.8 151 57.6
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 5.2e-44 181.8 149 61.1
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 2.2e-42 176.4 189 50.8
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 4.1e-41 172.2 123 69.9
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 4.2e-38 162.2 185 52.4
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 4.2e-38 162.2 185 52.4
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 5.2e-36 155.2 110 68.2
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 9.8e-35 151.0 128 53.9
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 2.8e-34 149.4 184 47.3
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 1.2e-32 144.1 131 55.7
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 2.7e-32 142.9 149 49.7
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 4.5e-32 142.1 166 50.0
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 8.5e-31 137.9 92 71.7
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 9.5e-30 134.4 84 76.2
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 2.8e-29 132.9 78 84.6
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 3.7e-26 122.5 189 40.2
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 4.1e-25 119.0 166 44.6
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 5.4e-25 118.6 61 96.7
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 9.2e-25 117.9 149 47.0
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 2.6e-19 99.8 154 35.1
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 4.9e-18 95.5 51 82.4
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 3.2e-09 66.2 55 50.9


User provided reference genes

Program Settings