Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p03950 Brassica napus HOM05D008029 ORTHO05D003588 7.6e-109 397.1 193 100.0
BraA05t19383Z Brassica rapa HOM05D008029 ORTHO05D003588 5.6e-104 380.9 185 98.4
A03p46150 Brassica napus HOM05D008029 ORTHO05D003588 7.4e-96 354.0 189 91.0
BolC4t22100H Brassica oleracea HOM05D008029 ORTHO05D003588 4.2e-83 311.6 173 87.3
A06p31150 Brassica napus HOM05D008029 ORTHO05D003588 1.4e-78 296.6 184 79.9
A09p45570 Brassica napus HOM05D008029 ORTHO05D003588 2.4e-62 242.7 131 88.5
BraA09t40018Z Brassica rapa HOM05D008029 ORTHO05D003588 2.4e-62 242.7 131 88.5
Sp7g10340 Schrenkiella parvula HOM05D008029 ORTHO05D003588 1.9e-51 206.5 178 62.9
Thhalv10001732m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 4.0e-41 172.2 173 55.5
Thhalv10010901m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.2e-40 170.6 211 49.3
A04p33040 Brassica napus HOM05D008029 ORTHO05D003588 1.5e-40 170.2 187 54.0
BraA04t18763Z Brassica rapa HOM05D008029 ORTHO05D003588 5.7e-40 168.3 187 53.5
BraA03t11653Z Brassica rapa HOM05D008029 ORTHO05D003588 7.5e-40 167.9 170 55.3
C04p70740 Brassica napus HOM05D008029 ORTHO05D003588 9.8e-40 167.5 186 52.7
BcaC02g07152 Brassica carinata HOM05D008029 ORTHO05D003588 1.3e-39 167.2 187 53.5
BolC4t28574H Brassica oleracea HOM05D008029 ORTHO05D003588 1.3e-39 167.2 187 53.5
BolC4t28575H Brassica oleracea HOM05D008029 ORTHO05D003588 2.8e-39 166.0 187 52.4
A03p24440 Brassica napus HOM05D008029 ORTHO05D003588 6.3e-39 164.9 170 54.7
BraA05t19382Z Brassica rapa HOM05D008029 ORTHO05D003588 1.8e-38 163.3 192 53.1
AL4G42570 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 5.9e-37 158.3 186 50.5
C03p29140 Brassica napus HOM05D008029 ORTHO05D003588 5.0e-36 155.2 206 48.1
AL4G42610 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.1e-35 154.1 173 53.8
BcaC01g05215 Brassica carinata HOM05D008029 ORTHO05D003588 1.1e-35 154.1 178 51.7
BolC3t15266H Brassica oleracea HOM05D008029 ORTHO05D003588 5.5e-35 151.8 206 47.1
A05p03940 Brassica napus HOM05D008029 ORTHO05D003588 5.7e-32 141.7 166 50.0
CARHR050270 Cardamine hirsuta HOM05D008029 ORTHO05D003588 2.2e-31 139.8 187 45.5
C04p70750 Brassica napus HOM05D000384 ORTHO05D000468 9.2e-30 134.4 141 56.0
BcaC02g07151 Brassica carinata HOM05D000384 ORTHO05D000468 3.5e-29 132.5 141 55.3
AT2G43740 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 9.5e-27 124.4 199 40.7
AT2G43730 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 1.6e-26 123.6 178 43.3
BcaB01g03363 Brassica carinata HOM05D008029 ORTHO05D003588 1.6e-26 123.6 160 46.9
AL4G42580 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.4e-25 120.6 182 43.4
Carub.0004s2627 Capsella rubella HOM05D008029 ORTHO05D003588 6.8e-25 118.2 145 51.7
Aa31LG1G25450 Aethionema arabicum HOM05D008029 ORTHO05D003588 2.0e-24 116.7 175 44.6
AL4G42600 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.1e-22 110.9 214 35.0
BcaB06g29345 Brassica carinata HOM05D008029 ORTHO05D003588 1.9e-22 110.2 146 46.6
Sp4g25800 Schrenkiella parvula HOM05D008029 ORTHO05D016094 1.0e-20 104.4 162 43.2
A03p24450 Brassica napus HOM05D008029 ORTHO05D003588 1.5e-19 100.5 146 43.8
C04p70730 Brassica napus HOM05D008029 ORTHO05D016094 1.6e-18 97.1 156 43.6
BraA03t11654Z Brassica rapa HOM05D008029 ORTHO05D003588 1.6e-18 97.1 146 43.2
AL4G42590 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 4.7e-18 95.5 122 47.5
BcaC02g07154 Brassica carinata HOM05D008029 ORTHO05D016094 6.2e-18 95.1 154 44.2
BolC4t28573H Brassica oleracea HOM05D008029 ORTHO05D016094 8.1e-18 94.7 156 42.9
BcaC01g05216 Brassica carinata HOM05D008029 ORTHO05D003588 1.4e-17 94.0 146 41.8
C03p29130 Brassica napus HOM05D008029 ORTHO05D003588 1.4e-17 94.0 146 41.8
BolC3t15265H Brassica oleracea HOM05D008029 ORTHO05D003588 1.4e-17 94.0 146 41.8
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 2.3e-17 93.2 147 38.8
MSTRG.21769 Avicennia marina HOM05D000862 ORTHO05D003588 8.9e-17 91.3 149 37.6
BraA04t18762Z Brassica rapa HOM05D008029 ORTHO05D003588 1.5e-16 90.5 137 40.9
Thhalv10001798m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.5e-16 90.5 182 37.4
CARHR099620 Cardamine hirsuta HOM05D008029 ORTHO05D003588 2.0e-16 90.1 78 61.5
A03p24430 Brassica napus HOM05D021446 ORTHO05D016094 2.6e-16 89.7 181 34.3
BraA03t11652Z Brassica rapa HOM05D021446 ORTHO05D016094 2.6e-16 89.7 181 34.3
AUR62039285 Chenopodium quinoa HOM05D008029 ORTHO05D003588 9.8e-16 87.8 176 35.8
BcaC02g12367 Brassica carinata HOM05D008029 ORTHO05D003588 1.3e-15 87.4 122 47.5
C04p04700 Brassica napus HOM05D008029 ORTHO05D003588 1.3e-15 87.4 122 47.5
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 1.7e-15 87.0 139 36.0
Peaxi162Scf00062g01918 Petunia axillaris HOM05D000862 ORTHO05D003588 1.7e-15 87.0 149 40.3
CAN.G749.20 Capsicum annuum HOM05D000862 ORTHO05D003588 2.2e-15 86.7 160 34.4
TAR636G1750 Trochodendron aralioides HOM05D000862 ORTHO05D003588 4.9e-15 85.5 150 35.3
Oeu016489.1 Olea europaea HOM05D007843 ORTHO05D003639 6.4e-15 85.1 150 34.7
CAN.G749.24 Capsicum annuum HOM05D000862 ORTHO05D003588 3.2e-14 82.8 158 33.5
SGA_v2.0_scaffold480G52303 Striga asiatica HOM05D000862 ORTHO05D003588 3.2e-14 82.8 141 36.9
CAN.G749.18 Capsicum annuum HOM05D000862 ORTHO05D003588 5.4e-14 82.0 149 36.2
Aa31LG1G25460 Aethionema arabicum HOM05D000402 ORTHO05D000263 7.1e-14 81.6 103 45.6
BcaC02g07153 Brassica carinata HOM05D008029 ORTHO05D016094 1.2e-13 80.9 151 37.1
A04p33030 Brassica napus HOM05D008029 ORTHO05D003588 1.2e-13 80.9 128 40.6
TAR636G0912 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.2e-13 80.9 150 32.7
Rhsim02G0004300 Rhododendron simsii HOM05D000862 ORTHO05D003588 2.1e-13 80.1 151 37.7
EL10Ac3g05500 Beta vulgaris HOM05D008029 ORTHO05D003588 6.0e-13 78.6 199 33.2
Dinv15179 Davidia involucrata HOM05D000862 ORTHO05D003588 6.0e-13 78.6 146 39.0
EL10Ac3g05501 Beta vulgaris HOM05D008029 ORTHO05D003588 1.0e-12 77.8 175 30.9
PGSC0003DMG400043196 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.0e-12 77.8 154 31.2
Peaxi162Scf00788g00022 Petunia axillaris HOM05D008029 ORTHO05D003588 1.3e-12 77.4 138 34.1
Actinidia13361 Actinidia chinensis HOM05D000862 ORTHO05D003588 3.0e-12 76.3 155 34.2
Aqoxy2G02742 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 3.9e-12 75.9 146 37.0
Sc13g0005910 Simmondsia chinensis HOM05D000862 ORTHO05D003588 5.1e-12 75.5 149 36.2
AT2G43745 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 6.6e-12 75.1 101 48.5
PGSC0003DMG400006098 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.1e-11 74.3 145 35.9
THA.LOC104800921 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 1.1e-11 74.3 188 32.4
CSS0039572 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.9e-11 73.6 162 32.7
AT1G05770 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 2.5e-11 73.2 173 32.4
Thhalv10008892m.g Eutrema salsugineum HOM05D000862 ORTHO05D003588 3.3e-11 72.8 152 34.9
PGSC0003DMG400041018 Solanum tuberosum HOM05D000862 ORTHO05D003588 3.3e-11 72.8 176 30.1
CAN.G575.17 Capsicum annuum HOM05D000966 ORTHO05D002384 4.3e-11 72.4 143 35.0
TAR636G1248 Trochodendron aralioides HOM05D000862 ORTHO05D003588 4.3e-11 72.4 158 32.3
Lsat_1_v5_gn_6_18400 Lactuca sativa HOM05D000862 ORTHO05D003588 5.6e-11 72.0 143 37.8
Nitab4.5_0009547g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 5.6e-11 72.0 144 35.4
Peaxi162Scf00285g00444 Petunia axillaris HOM05D000862 ORTHO05D003588 5.6e-11 72.0 144 34.0
THA.LOC104815871 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 5.6e-11 72.0 148 33.1
AL1G15670 Arabidopsis lyrata HOM05D000862 ORTHO05D003588 7.3e-11 71.6 152 34.2
TAR636G1580 Trochodendron aralioides HOM05D000862 ORTHO05D003588 9.5e-11 71.2 138 34.8
TAR636G2528 Trochodendron aralioides HOM05D000862 ORTHO05D003588 9.5e-11 71.2 140 35.0
PGSC0003DMG400006100 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.2e-10 70.9 169 31.4
Ah.04g156870 Amaranthus hybridus HOM05D008029 ORTHO05D003588 2.1e-10 70.1 154 35.1
Sp1g04570 Schrenkiella parvula HOM05D000862 ORTHO05D003588 2.1e-10 70.1 153 34.0
CSS0029865 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 2.8e-10 69.7 160 33.1
CSS0034808 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 2.8e-10 69.7 160 33.1
Peaxi162Scf01044g00232 Petunia axillaris HOM05D000862 ORTHO05D003588 3.6e-10 69.3 174 32.2
THA.LOC104800920 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 4.7e-10 68.9 159 32.1
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 6.2e-10 68.6 147 33.3
BcaC05g24342 Brassica carinata HOM05D000862 ORTHO05D003588 8.1e-10 68.2 146 35.6
CSS0041630 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 8.1e-10 68.2 141 32.6
CAN.G220.50 Capsicum annuum HOM05D000862 ORTHO05D000943 1.1e-09 67.8 142 33.8
Thhalv10009313m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.1e-09 67.8 149 34.2
Lsat_1_v5_gn_6_16781 Lactuca sativa HOM05D000862 ORTHO05D003588 1.1e-09 67.8 141 35.5
Nitab4.5_0001124g0110 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.1e-09 67.8 140 30.7
TAR636G2997 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.1e-09 67.8 157 33.1
DCAR_011947 Daucus carota HOM05D000862 ORTHO05D003588 1.4e-09 67.4 146 31.5
Aqoxy1G02186 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 1.8e-09 67.0 156 30.8
Nitab4.5_0001787g0050 Nicotiana tabacum HOM05D000862 ORTHO05D003588 2.3e-09 66.6 141 32.6
A10p04470 Brassica napus HOM05D000862 ORTHO05D003588 3.1e-09 66.2 152 32.9
C05p04090 Brassica napus HOM05D000862 ORTHO05D003588 3.1e-09 66.2 152 32.9
BolC5t29188H Brassica oleracea HOM05D000862 ORTHO05D003588 3.1e-09 66.2 152 32.9
BraA10t42714Z Brassica rapa HOM05D000862 ORTHO05D003588 3.1e-09 66.2 152 32.9
CARHR099610 Cardamine hirsuta HOM05D008029 ORTHO05D003588 3.1e-09 66.2 87 50.6
BcaC05g24339 Brassica carinata HOM05D000862 ORTHO05D003588 4.0e-09 65.9 153 32.7
DCAR_026995 Daucus carota HOM05D000862 ORTHO05D003588 4.0e-09 65.9 153 31.4
Solyc09g083030.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 4.0e-09 65.9 142 30.3
Sopen09g031900 Solanum pennellii HOM05D000862 ORTHO05D003588 4.0e-09 65.9 142 30.3
Rhsim04G0236500 Rhododendron simsii HOM05D000862 ORTHO05D003588 6.8e-09 65.1 142 33.8
BcaB01g03364 Brassica carinata HOM05D008029 ORTHO05D003588 8.9e-09 64.7 88 45.5
CAN.G220.49 Capsicum annuum HOM05D000862 ORTHO05D000943 8.9e-09 64.7 172 32.0
Sopen09g033370 Solanum pennellii HOM05D000862 ORTHO05D000943 1.2e-08 64.3 140 32.1
PGSC0003DMG404017205 Solanum tuberosum HOM05D000862 ORTHO05D000943 1.2e-08 64.3 141 32.6
Nitab4.5_0012347g0020 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.5e-08 63.9 154 31.2
Rhsim04G0236200 Rhododendron simsii HOM05D000862 ORTHO05D003588 1.5e-08 63.9 141 33.3
BcaC01g05217 Brassica carinata HOM05D021446 ORTHO05D016094 2.0e-08 63.5 115 39.1
Solyc09g090445.1 Solanum lycopersicum HOM05D000862 ORTHO05D000943 2.0e-08 63.5 140 31.4
Rhsim04G0236000 Rhododendron simsii HOM05D000862 ORTHO05D003588 3.4e-08 62.8 150 32.0
Nitab4.5_0002983g0010 Nicotiana tabacum HOM05D000011 ORTHO05D001721 5.8e-08 62.0 168 29.8
MELO3C003820.2 Cucumis melo HOM05D000862 ORTHO05D000943 7.6e-08 61.6 165 27.9
Ah.06g187570 Amaranthus hybridus HOM05D000056 ORTHO05D000019 9.9e-08 61.2 160 31.9
C05p04080 Brassica napus HOM05D008029 ORTHO05D003588 9.9e-08 61.2 146 34.9
CAN.G749.17 Capsicum annuum HOM05D000002 ORTHO05D003588 1.3e-07 60.8 109 36.7
C03p29120 Brassica napus HOM05D021446 ORTHO05D016094 1.7e-07 60.5 115 38.3
BolC3t15264H Brassica oleracea HOM05D021446 ORTHO05D016094 1.7e-07 60.5 115 38.3
AUR62001043 Chenopodium quinoa HOM05D000862 ORTHO05D003588 2.2e-07 60.1 146 32.9
AUR62004914 Chenopodium quinoa HOM05D000862 ORTHO05D003588 3.7e-07 59.3 147 30.6
TAR636G0218 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.7e-07 59.3 141 30.5
DCAR_026996 Daucus carota HOM05D000862 ORTHO05D003588 4.9e-07 58.9 153 30.1
DCAR_026997 Daucus carota HOM05D000862 ORTHO05D003588 4.9e-07 58.9 150 28.7
Nitab4.5_0003180g0070 Nicotiana tabacum HOM05D000011 ORTHO05D001721 6.4e-07 58.5 161 30.4
PGSC0003DMG400041736 Solanum tuberosum HOM05D000862 ORTHO05D003588 8.4e-07 58.2 137 33.6
CAN.G575.18 Capsicum annuum HOM05D000862 ORTHO05D003588 1.1e-06 57.8 149 28.9
Nitab4.5_0002616g0020 Nicotiana tabacum HOM05D000862 ORTHO05D000943 1.9e-06 57.0 148 30.4
Peaxi162Scf00474g00045 Petunia axillaris HOM05D000862 ORTHO05D000943 3.2e-06 56.2 161 28.6
Rhsim04G0235700 Rhododendron simsii HOM05D000862 ORTHO05D003588 5.4e-06 55.5 80 36.2
Rhsim04G0235800 Rhododendron simsii HOM05D000862 ORTHO05D003588 5.4e-06 55.5 80 36.2
Rhsim04G0238300 Rhododendron simsii HOM05D000862 ORTHO05D003588 5.4e-06 55.5 80 36.2
Nitab4.5_0002727g0030 Nicotiana tabacum HOM05D000011 ORTHO05D001721 7.1e-06 55.1 171 29.8
Nitab4.5_0002977g0010 Nicotiana tabacum HOM05D000862 ORTHO05D000943 7.1e-06 55.1 174 27.0
Nitab4.5_0002977g0140 Nicotiana tabacum HOM05D000011 ORTHO05D001721 7.1e-06 55.1 150 30.0
Aa31LG1G8610 Aethionema arabicum HOM05D000862 ORTHO05D003588 9.2e-06 54.7 82 37.8


User provided reference genes

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