Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p03390 Brassica napus HOM05D003819 ORTHO05D019686 2.9e-51 204.9 101 100.0
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 3.2e-42 174.9 100 89.0
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 1.6e-41 172.6 100 88.0
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 1.6e-41 172.6 100 88.0
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 3.5e-41 171.4 100 88.0
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 6.3e-38 160.6 92 90.2
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 1.4e-37 159.5 96 85.4
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 1.8e-37 159.1 85 92.9
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 4.1e-37 157.9 85 91.8
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 4.1e-37 157.9 85 91.8
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 4.1e-37 157.9 85 91.8
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 6.9e-37 157.1 85 92.9
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 2.2e-35 152.1 94 84.0
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 5.0e-35 151.0 93 83.9
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 6.5e-35 150.6 99 81.8
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 2.1e-33 145.6 99 77.8
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 3.0e-32 141.7 98 74.5
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 1.9e-31 139.0 83 81.9
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 9.0e-29 130.2 90 67.8
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 1.2e-28 129.8 84 70.2
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 3.4e-28 128.3 86 65.1
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 7.7e-28 127.1 94 66.0
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 1.0e-27 126.7 92 67.4
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 2.9e-27 125.2 98 61.2
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 6.5e-27 124.0 88 68.2
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 6.5e-27 124.0 88 68.2
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 8.5e-27 123.6 88 67.0
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 8.5e-27 123.6 87 69.0
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 1.1e-26 123.2 96 61.5
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 1.4e-26 122.9 96 62.5
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 1.4e-26 122.9 86 61.6
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 5.5e-26 120.9 93 57.0
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 5.5e-26 120.9 82 68.3
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 1.6e-25 119.4 84 65.5
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 1.6e-25 119.4 82 65.9
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 2.1e-25 119.0 86 62.8
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 2.1e-25 119.0 93 61.3
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 3.6e-25 118.2 82 65.9
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 3.6e-25 118.2 82 65.9
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 4.6e-25 117.9 93 55.9
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 4.6e-25 117.9 77 68.8
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 4.6e-25 117.9 77 68.8
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 4.6e-25 117.9 77 68.8
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 6.1e-25 117.5 83 65.1
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 7.9e-25 117.1 82 67.1
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 7.9e-25 117.1 88 65.9
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 7.9e-25 117.1 82 63.4
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 1.0e-24 116.7 91 58.2
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 1.0e-24 116.7 82 64.6
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 1.4e-24 116.3 82 65.9
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 1.8e-24 115.9 84 61.9
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 1.8e-24 115.9 93 57.0
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 2.3e-24 115.5 82 64.6
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 3.0e-24 115.2 77 68.8
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 3.0e-24 115.2 82 64.6
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 3.0e-24 115.2 82 64.6
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 3.0e-24 115.2 82 64.6
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 6.7e-24 114.0 84 64.3
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 6.7e-24 114.0 82 63.4
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 6.7e-24 114.0 77 68.8
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 6.7e-24 114.0 77 68.8
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 8.8e-24 113.6 85 61.2
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 1.1e-23 113.2 97 57.7
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 1.1e-23 113.2 99 55.6
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 1.1e-23 113.2 96 54.2
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 1.5e-23 112.8 94 60.6
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 1.5e-23 112.8 84 64.3
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.5e-23 112.8 77 67.5
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 2.0e-23 112.5 82 62.2
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 2.0e-23 112.5 101 56.4
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 2.5e-23 112.1 82 63.4
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 3.3e-23 111.7 87 56.3
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 4.3e-23 111.3 89 56.2
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 5.7e-23 110.9 99 55.6
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 7.4e-23 110.5 99 55.6
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 7.4e-23 110.5 93 57.0
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 7.4e-23 110.5 95 55.8
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 9.7e-23 110.2 82 65.9
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 1.3e-22 109.8 96 55.2
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 1.3e-22 109.8 96 57.3
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 1.3e-22 109.8 84 61.9
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 2.2e-22 109.0 96 57.3
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 2.8e-22 108.6 88 61.4
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 3.7e-22 108.2 83 61.4
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 4.8e-22 107.8 92 59.8
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 8.2e-22 107.1 88 60.2
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 8.2e-22 107.1 82 59.8
Nn6g34429 Nelumbo nucifera HOM05D003819 ORTHO05D019686 8.2e-22 107.1 81 60.5
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 1.1e-21 106.7 86 57.0
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 1.4e-21 106.3 86 55.8
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 1.8e-21 105.9 99 51.5
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 1.8e-21 105.9 95 53.7
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 2.4e-21 105.5 86 55.8
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 2.4e-21 105.5 88 55.7
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 3.1e-21 105.1 82 58.5
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 4.1e-21 104.8 84 58.3
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 4.1e-21 104.8 84 60.7
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 6.9e-21 104.0 84 58.3
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 9.1e-21 103.6 94 55.3
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 2.0e-20 102.4 81 56.8
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 2.6e-20 102.1 84 57.1
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 2.6e-20 102.1 75 68.0
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 3.4e-20 101.7 94 51.1
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 5.9e-20 100.9 89 50.6
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 1.3e-19 99.8 86 53.5
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 2.2e-19 99.0 82 59.8
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 2.2e-19 99.0 82 59.8
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 5.0e-19 97.8 82 56.1
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 6.5e-19 97.4 93 51.6
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 8.5e-19 97.1 89 55.1
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 8.5e-19 97.1 99 48.5
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 1.9e-18 95.9 89 53.9
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 3.2e-18 95.1 86 51.2
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 3.2e-18 95.1 101 45.5
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 4.2e-18 94.7 91 49.5
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 1.2e-17 93.2 88 53.4
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 1.2e-17 93.2 91 52.7
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.6e-17 92.8 78 59.0
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 4.7e-17 91.3 78 59.0
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 4.7e-17 91.3 78 59.0
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 6.1e-17 90.9 101 44.6
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 6.1e-17 90.9 99 46.5
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 7.9e-17 90.5 80 52.5
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 7.9e-17 90.5 90 50.0
Aqoxy450s002 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 1.8e-16 89.4 78 53.8
Aqoxy7G03214 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 1.8e-16 89.4 78 53.8
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 3.9e-16 88.2 99 46.5
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 6.7e-16 87.4 79 54.4
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 8.8e-16 87.0 84 50.0
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 8.8e-16 87.0 91 50.5
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 1.1e-15 86.7 78 50.0
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 2.6e-15 85.5 83 48.2
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 4.8e-14 81.3 95 47.4
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 2.4e-13 79.0 95 46.3
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 5.3e-13 77.8 93 46.2
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 7.0e-13 77.4 75 50.7
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 2.0e-12 75.9 100 40.0
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 5.9e-12 74.3 93 44.1
BcaNung03225 Brassica carinata HOM05D002616 ORTHO05D000256 3.8e-11 71.6 42 88.1
Nn1g05663 Nelumbo nucifera HOM05D003819 ORTHO05D019686 3.8e-11 71.6 55 65.5
Nn3g18421 Nelumbo nucifera HOM05D003819 ORTHO05D019686 1.6e-09 66.2 67 47.8
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 2.1e-09 65.9 100 42.0
Nn5g28220 Nelumbo nucifera HOM05D003819 ORTHO05D019686 1.0e-08 63.5 53 56.6
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 5.2e-08 61.2 92 35.9
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 4.4e-07 58.2 88 36.4
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 7.5e-07 57.4 99 39.4
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.7e-06 56.2 55 50.9
Psat3g013160 Pisum sativum HOM05D003819 ORTHO05D005291 8.2e-06 53.9 72 38.9


User provided reference genes

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