Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p03380 Brassica napus HOM05D003819 ORTHO05D005291 4.6e-85 317.8 151 100.0
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 6.4e-79 297.4 179 83.2
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 6.4e-79 297.4 179 83.2
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 1.4e-78 296.2 179 82.7
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 1.9e-78 295.8 179 82.7
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 1.9e-78 295.8 179 82.7
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 9.2e-78 293.5 179 82.1
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 1.6e-77 292.7 179 81.6
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 6.0e-77 290.8 179 81.0
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 6.0e-77 290.8 179 81.0
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 6.0e-77 290.8 179 80.4
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 7.8e-77 290.4 179 80.4
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 2.3e-76 288.9 179 80.4
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 5.1e-76 287.7 179 79.9
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 5.1e-76 287.7 179 79.9
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 5.1e-76 287.7 179 79.9
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 1.5e-75 286.2 179 79.9
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 4.9e-71 271.2 179 75.4
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 3.1e-65 251.9 177 71.2
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 2.2e-63 245.7 177 68.4
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 2.9e-63 245.4 179 68.7
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 2.9e-63 245.4 179 69.3
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 6.4e-63 244.2 179 68.2
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 6.4e-63 244.2 179 68.2
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 1.9e-62 242.7 179 69.3
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 1.9e-62 242.7 179 68.7
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 3.2e-62 241.9 180 68.9
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 3.2e-62 241.9 179 69.3
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 3.2e-62 241.9 177 69.5
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 7.1e-62 240.7 177 68.9
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 9.3e-62 240.4 181 67.4
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.6e-61 239.6 177 68.9
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 2.1e-61 239.2 179 68.2
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 2.1e-61 239.2 181 65.2
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 2.1e-61 239.2 181 65.2
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 2.7e-61 238.8 179 67.0
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 6.0e-61 237.7 177 68.4
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 7.9e-61 237.3 180 67.8
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 7.9e-61 237.3 180 65.6
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 7.9e-61 237.3 180 65.6
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 7.9e-61 237.3 180 65.6
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 7.9e-61 237.3 180 65.6
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.0e-60 236.9 177 68.4
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 1.0e-60 236.9 179 67.6
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 1.3e-60 236.5 177 66.7
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 3.0e-60 235.3 177 67.8
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 3.9e-60 235.0 180 65.0
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 3.9e-60 235.0 177 68.9
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 6.7e-60 234.2 179 65.9
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 1.1e-59 233.4 178 67.4
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 5.6e-59 231.1 177 66.7
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 1.3e-58 229.9 177 66.1
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 1.6e-58 229.6 181 65.7
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 3.6e-58 228.4 179 66.5
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 4.8e-58 228.0 179 64.8
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 4.8e-58 228.0 179 64.8
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 6.2e-58 227.6 178 65.2
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 8.1e-58 227.3 179 64.8
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 8.1e-58 227.3 177 66.7
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 1.4e-57 226.5 179 64.2
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 1.4e-57 226.5 179 64.8
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 4.0e-57 224.9 177 65.0
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 4.0e-57 224.9 177 66.7
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 5.3e-57 224.6 177 64.4
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 6.9e-57 224.2 177 63.3
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 6.9e-57 224.2 177 63.3
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 1.5e-56 223.0 177 65.0
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 2.0e-56 222.6 179 64.8
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 2.0e-56 222.6 177 66.1
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 2.0e-56 222.6 178 63.5
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 2.0e-56 222.6 177 66.1
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 2.0e-56 222.6 177 64.4
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 2.0e-56 222.6 177 66.1
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 2.6e-56 222.2 177 65.0
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 2.6e-56 222.2 177 65.0
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 2.6e-56 222.2 179 64.8
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 2.6e-56 222.2 179 63.7
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 2.6e-56 222.2 178 64.6
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 3.4e-56 221.9 177 64.4
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 3.4e-56 221.9 177 66.1
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 7.6e-56 220.7 178 63.5
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 9.9e-56 220.3 175 64.6
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 1.3e-55 219.9 181 63.0
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 1.3e-55 219.9 177 65.5
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 1.3e-55 219.9 177 65.0
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 1.3e-55 219.9 177 65.0
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 1.7e-55 219.5 177 64.4
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 1.7e-55 219.5 179 63.7
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 2.9e-55 218.8 177 62.7
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 2.9e-55 218.8 178 64.6
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 4.9e-55 218.0 177 64.4
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 8.4e-55 217.2 177 62.7
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 1.1e-54 216.9 177 62.7
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 1.4e-54 216.5 179 62.6
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 3.2e-54 215.3 177 63.8
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 3.2e-54 215.3 177 62.1
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 3.2e-54 215.3 177 64.4
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 3.2e-54 215.3 177 64.4
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 4.2e-54 214.9 174 64.9
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 1.2e-53 213.4 177 63.8
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 2.1e-53 212.6 177 61.6
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 3.5e-53 211.8 177 62.1
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 1.3e-52 209.9 177 62.7
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 2.3e-52 209.1 177 61.0
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 3.9e-52 208.4 177 61.0
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 1.5e-51 206.5 178 59.6
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 1.9e-51 206.1 173 61.8
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 1.6e-50 203.0 177 61.0
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 2.1e-50 202.6 175 60.0
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 2.1e-50 202.6 177 57.6
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.8e-50 202.2 181 59.7
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 4.8e-50 201.4 177 58.8
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 1.1e-49 200.3 176 59.7
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 1.8e-49 199.5 177 58.2
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.1e-49 198.7 175 59.4
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 4.0e-49 198.4 179 55.3
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 9.0e-49 197.2 180 57.8
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 1.5e-48 196.4 179 57.5
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 2.0e-48 196.1 179 55.9
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 2.0e-48 196.1 180 56.1
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 2.6e-48 195.7 180 55.6
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 6.5e-47 191.0 173 57.2
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 8.4e-47 190.7 179 55.3
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.1e-46 190.3 173 56.6
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.9e-46 189.5 173 57.2
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 3.2e-46 188.7 178 56.7
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 5.5e-46 188.0 179 57.0
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 2.1e-45 186.0 155 60.0
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 2.1e-45 186.0 180 57.8
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 4.6e-45 184.9 178 51.1
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 1.3e-44 183.3 179 55.9
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 4.6e-37 158.3 179 51.4
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 3.0e-36 155.6 149 58.4
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 2.5e-35 152.5 180 44.4
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 9.1e-33 144.1 177 42.9
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 6.5e-31 137.9 177 44.6
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 3.2e-30 135.6 185 44.3
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 7.9e-29 131.0 178 38.8
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 1.2e-24 117.1 118 52.5
C04p03970 Brassica napus HOM05D003819 ORTHO05D032918 5.9e-24 114.8 62 85.5
AUR62037398 Chenopodium quinoa HOM05D003819 ORTHO05D005291 2.9e-23 112.5 77 71.4
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 8.5e-23 110.9 77 67.5
BcaC02g12428 Brassica carinata HOM05D003819 ORTHO05D032918 5.5e-22 108.2 62 82.3
BolC4t22033H Brassica oleracea HOM05D003819 ORTHO05D032918 5.5e-22 108.2 62 82.3
Nn1g05661 Nelumbo nucifera HOM05D003819 ORTHO05D005291 2.2e-10 69.7 53 66.0
Lalb_Chr14g0367511 Lupinus albus HOM05D003819 ORTHO05D005291 3.7e-10 68.9 78 48.7
Aqoxy450s003 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 1.9e-06 56.6 44 59.1
Aqoxy7G03213 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 1.9e-06 56.6 44 59.1
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 4.2e-06 55.5 37 62.2


User provided reference genes

Program Settings