Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 0.0e+00 1604.7 831 100.0
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 0.0e+00 1575.5 833 98.4
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 0.0e+00 1546.9 833 96.6
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 0.0e+00 1480.3 841 90.5
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 0.0e+00 1469.1 840 90.2
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 0.0e+00 1469.1 841 89.9
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 0.0e+00 1464.1 791 96.6
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 0.0e+00 1460.7 841 90.2
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 0.0e+00 1454.5 840 89.3
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 0.0e+00 1451.8 842 89.0
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 0.0e+00 1383.6 890 81.2
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 0.0e+00 1258.8 858 76.6
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 2.4e-308 1062.0 870 64.4
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 2.9e-306 1055.0 870 64.0
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 1.1e-305 1053.1 874 64.3
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 9.6e-302 1040.0 869 63.4
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 9.6e-302 1040.0 870 63.3
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 1.3e-301 1039.6 871 63.0
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 2.9e-298 1028.5 869 63.4
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 3.5e-296 1021.5 874 61.3
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 4.6e-296 1021.1 872 61.7
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 6.0e-296 1020.8 865 63.2
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 2.3e-295 1018.8 864 62.0
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 1.5e-294 1016.1 857 62.1
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 3.3e-294 1015.0 866 62.9
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 4.3e-294 1014.6 875 64.2
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 9.6e-294 1013.4 865 61.4
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 2.1e-293 1012.3 864 61.5
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 3.7e-293 1011.5 865 61.3
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 4.8e-293 1011.1 872 62.2
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 4.8e-293 1011.1 872 62.2
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 1.1e-292 1010.0 867 60.8
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 1.4e-292 1009.6 872 61.5
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 1.8e-292 1009.2 860 62.7
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 4.0e-292 1008.1 869 62.3
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 2.6e-291 1005.4 860 62.0
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 3.4e-291 1005.0 873 60.7
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 7.6e-291 1003.8 869 61.9
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 9.3e-289 996.9 876 61.0
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 1.2e-288 996.5 861 61.2
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 1.0e-287 993.4 869 60.4
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 8.7e-287 990.3 824 63.8
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 2.5e-286 988.8 872 61.2
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 7.4e-286 987.3 862 61.1
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 5.3e-284 981.1 873 60.1
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 1.2e-283 979.9 875 59.3
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 2.0e-283 979.2 869 60.9
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 5.9e-283 977.6 870 60.8
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 5.9e-283 977.6 886 60.5
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 2.2e-282 975.7 867 61.0
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 1.9e-281 972.6 882 59.0
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.9e-281 972.6 883 58.8
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 4.2e-281 971.5 868 60.3
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 7.2e-281 970.7 873 60.5
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 7.2e-281 970.7 868 60.7
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 2.1e-280 969.1 866 60.5
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 2.1e-280 969.1 869 60.4
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 2.7e-280 968.8 833 61.5
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 6.7e-279 964.1 870 60.2
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 2.2e-277 959.1 868 60.4
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 1.8e-276 956.1 852 60.8
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 3.4e-275 951.8 831 60.8
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 3.8e-274 948.3 870 58.0
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 5.0e-274 948.0 875 58.5
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 1.1e-273 946.8 873 59.1
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 1.0e-271 940.3 870 57.5
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 1.8e-271 939.5 868 58.9
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 5.1e-271 937.9 873 57.2
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 7.4e-270 934.1 871 57.6
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 2.8e-269 932.2 876 57.1
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 1.8e-268 929.5 867 57.6
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 3.1e-268 928.7 880 56.5
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 4.2e-265 918.3 868 57.4
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 7.2e-265 917.5 878 55.7
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 2.8e-261 905.6 850 57.6
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 6.3e-261 904.4 857 58.5
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 2.6e-259 899.0 858 56.3
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 1.0e-258 897.1 877 56.6
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 2.7e-256 889.0 874 55.5
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 5.3e-252 874.8 864 54.7
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 5.9e-251 871.3 807 58.7
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 7.7e-251 870.9 807 58.5
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 9.4e-249 864.0 847 55.8
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 5.4e-244 848.2 848 54.2
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 4.5e-243 845.1 828 57.2
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 4.5e-243 845.1 747 62.1
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.5e-241 840.1 742 60.2
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 3.6e-240 835.5 808 56.8
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 7.0e-236 821.2 870 51.5
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 2.1e-232 809.7 873 51.9
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 5.4e-228 795.0 869 51.2
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 6.6e-226 788.1 862 51.3
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 5.4e-220 768.5 653 62.5
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 1.6e-219 766.9 868 48.3
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 3.3e-217 759.2 859 50.4
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 7.8e-203 711.4 662 59.7
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 1.1e-196 691.0 798 50.9
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 9.9e-190 667.9 752 49.9
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 4.5e-158 562.8 743 45.0
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 2.7e-155 553.5 527 56.0
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 4.5e-142 509.6 817 37.9
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 7.7e-142 508.8 436 61.0
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 1.0e-138 498.4 845 38.1
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 3.3e-137 493.4 819 39.2
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 1.7e-93 348.2 298 60.1
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 2.3e-93 347.8 990 29.3
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 2.2e-56 224.9 178 70.8
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 1.5e-28 132.5 912 23.5
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 5.0e-24 117.5 100 60.0
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 4.2e-23 114.4 85 61.2
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 6.7e-21 107.1 80 72.5
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 7.7e-17 93.6 64 70.3
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 2.9e-16 91.7 904 22.2
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 1.1e-15 89.7 98 46.9
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 4.7e-14 84.3 559 24.2
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 2.3e-13 82.0 65 56.9
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 8.8e-13 80.1 57 66.7
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 2.4e-10 72.0 101 50.5
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 4.1e-10 71.2 65 52.3
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 4.5e-09 67.8 56 57.1
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 2.3e-08 65.5 56 51.8
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 4.2e-07 61.2 45 57.8
Lsat_1_v5_gn_4_67501 Lactuca sativa HOM05D001373 ORTHO05D001330 1.2e-06 59.7 56 53.6


User provided reference genes

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