Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 1.1e-59 233.0 113 100.0
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 2.5e-59 231.9 113 99.1
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 5.2e-57 224.2 112 98.2
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.5e-56 222.6 112 97.3
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 2.0e-56 222.2 112 97.3
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 2.0e-56 222.2 112 97.3
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 9.7e-56 219.9 112 96.4
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.3e-55 219.5 112 95.5
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.2e-55 218.8 112 95.5
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 2.2e-55 218.8 112 95.5
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.1e-54 216.5 112 93.8
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 2.4e-54 215.3 114 93.9
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 5.3e-54 214.2 112 95.5
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 5.3e-54 214.2 108 93.5
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 7.0e-54 213.8 108 93.5
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 1.2e-53 213.0 112 93.8
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 2.0e-53 212.2 108 93.5
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 4.5e-53 211.1 106 93.4
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 5.9e-53 210.7 108 91.7
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 1.3e-52 209.5 106 95.3
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 1.3e-52 209.5 106 95.3
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 2.2e-52 208.8 114 91.2
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 2.2e-52 208.8 114 91.2
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 7.2e-51 203.8 112 87.5
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 2.1e-50 202.2 110 88.2
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 2.7e-50 201.8 112 89.3
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 4.7e-50 201.1 112 89.3
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 4.7e-50 201.1 112 89.3
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 4.7e-50 201.1 112 89.3
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 1.0e-49 199.9 112 88.4
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 4.8e-47 191.0 110 85.5
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 7.0e-46 187.2 103 84.5
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 7.2e-43 177.2 92 84.8
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 1.6e-42 176.0 95 81.1
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 2.7e-42 175.3 108 75.0
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.4e-41 172.9 104 75.0
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.8e-41 172.6 106 75.5
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.3e-41 172.2 100 82.0
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 2.3e-41 172.2 108 75.0
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 3.0e-41 171.8 101 79.2
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 4.0e-41 171.4 106 74.5
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 5.2e-41 171.0 104 74.0
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 5.2e-41 171.0 104 74.0
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 5.2e-41 171.0 104 74.0
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 6.8e-41 170.6 104 74.0
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 6.8e-41 170.6 104 76.9
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 1.2e-40 169.9 102 76.5
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 2.6e-40 168.7 116 68.1
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 3.4e-40 168.3 107 72.0
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 9.8e-40 166.8 103 74.8
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 9.8e-40 166.8 108 72.2
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 9.8e-40 166.8 106 73.6
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 1.3e-39 166.4 108 72.2
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.7e-39 166.0 114 70.2
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.7e-39 166.0 104 72.1
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 2.2e-39 165.6 103 74.8
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 3.7e-39 164.9 106 73.6
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 4.8e-39 164.5 112 67.0
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.3e-39 164.1 109 73.4
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.3e-39 164.1 109 73.4
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 6.3e-39 164.1 110 72.7
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 1.1e-38 163.3 108 72.2
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 1.1e-38 163.3 108 71.3
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 1.1e-38 163.3 108 71.3
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.4e-38 162.9 109 70.6
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.4e-38 162.9 107 69.2
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 1.4e-38 162.9 85 82.4
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 1.4e-38 162.9 85 82.4
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 1.8e-38 162.5 109 71.6
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 2.4e-38 162.2 97 74.2
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 3.1e-38 161.8 108 68.5
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 4.1e-38 161.4 102 75.5
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 4.1e-38 161.4 104 71.2
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 4.1e-38 161.4 111 69.4
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 5.4e-38 161.0 101 73.3
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 5.4e-38 161.0 110 68.2
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 7.0e-38 160.6 95 76.8
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 7.0e-38 160.6 107 71.0
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 7.0e-38 160.6 116 69.8
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 9.1e-38 160.2 104 70.2
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 9.1e-38 160.2 104 74.0
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 9.1e-38 160.2 116 65.5
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.2e-37 159.8 106 70.8
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.2e-37 159.8 92 78.3
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 1.2e-37 159.8 101 72.3
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 1.2e-37 159.8 98 75.5
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 1.2e-37 159.8 97 72.2
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 1.2e-37 159.8 116 64.7
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.6e-37 159.5 103 72.8
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.6e-37 159.5 103 71.8
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.6e-37 159.5 103 71.8
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 2.7e-37 158.7 105 71.4
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 5.9e-37 157.5 101 71.3
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 7.7e-37 157.1 107 70.1
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.3e-36 156.4 103 71.8
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.3e-36 156.4 103 71.8
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 1.7e-36 156.0 92 73.9
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 1.7e-36 156.0 111 64.9
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 2.9e-36 155.2 102 70.6
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.9e-36 155.2 109 68.8
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 2.9e-36 155.2 86 77.9
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 3.8e-36 154.8 105 69.5
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.8e-36 154.8 103 71.8
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 6.5e-36 154.1 110 68.2
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 8.5e-36 153.7 106 67.9
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 1.1e-35 153.3 104 68.3
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.1e-35 153.3 106 66.0
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.1e-35 153.3 107 68.2
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.5e-35 152.9 111 68.5
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 1.9e-35 152.5 99 70.7
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.9e-35 152.5 110 69.1
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.5e-35 152.1 113 64.6
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 3.2e-35 151.8 102 68.6
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 5.5e-35 151.0 83 80.7
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 7.2e-35 150.6 79 81.0
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 7.2e-35 150.6 103 66.0
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 9.5e-35 150.2 110 65.5
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 9.5e-35 150.2 103 65.0
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 9.5e-35 150.2 103 65.0
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.1e-34 149.1 102 65.7
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.8e-34 148.7 111 64.9
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 6.1e-34 147.5 96 71.9
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.0e-33 146.7 99 68.7
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.8e-33 146.0 113 63.7
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 2.3e-33 145.6 109 63.3
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.0e-33 145.2 101 66.3
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 5.2e-33 144.4 77 79.2
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 1.5e-32 142.9 106 64.2
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 1.5e-32 142.9 98 66.3
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 1.5e-32 142.9 96 68.8
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.0e-32 142.5 88 71.6
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 2.6e-32 142.1 107 63.6
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 4.4e-32 141.4 96 67.7
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 4.4e-32 141.4 96 67.7
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 1.7e-31 139.4 107 61.7
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.2e-31 139.0 106 63.2
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.9e-31 137.9 106 62.3
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 7.8e-29 130.6 83 65.1
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 8.6e-28 127.1 115 55.7
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 8.6e-28 127.1 82 73.2
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 1.1e-27 126.7 67 91.0
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.9e-27 125.9 84 63.1
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 8.9e-25 117.1 78 67.9
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 7.0e-22 107.5 78 65.4
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 3.5e-21 105.1 78 61.5
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.3e-20 103.2 70 75.7
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 5.6e-19 97.8 112 56.2
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 7.3e-19 97.4 82 54.9
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 9.5e-19 97.1 104 44.2
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 3.6e-18 95.1 74 64.9
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 4.0e-17 91.7 53 75.5
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 6.8e-17 90.9 106 46.2
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 8.3e-15 84.0 73 50.7
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.9e-12 75.1 65 55.4
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 1.1e-11 73.6 64 53.1
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 1.5e-08 63.2 48 62.5
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 1.3e-07 60.1 40 70.0


User provided reference genes

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