Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.4e-114 416.4 224 100.0
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.4e-114 416.4 224 100.0
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 5.7e-100 367.9 229 90.4
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.8e-98 362.8 229 90.0
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.8e-98 362.8 229 90.0
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 7.0e-82 307.8 263 69.2
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.2e-81 307.0 263 69.2
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 2.0e-81 306.2 264 68.2
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 2.0e-81 306.2 255 71.0
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.2e-78 297.0 265 66.8
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 3.1e-77 292.4 176 94.3
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 9.2e-74 280.8 246 70.3
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 4.3e-71 271.9 260 63.1
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.9e-59 232.6 253 58.5
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 3.7e-59 232.3 255 56.9
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 6.4e-59 231.5 256 55.5
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.9e-58 229.9 255 56.5
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 3.0e-56 222.6 263 55.9
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.9e-55 219.9 247 55.1
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 4.3e-55 218.8 243 58.8
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-53 214.2 253 55.7
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.4e-53 213.8 264 52.7
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 2.6e-52 209.5 250 54.8
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.6e-52 209.5 263 55.9
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 1.3e-51 207.2 255 53.7
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 2.9e-51 206.1 257 52.5
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 4.9e-51 205.3 255 51.4
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 2.1e-46 189.9 257 51.8
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 3.4e-44 182.6 253 51.4
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 7.6e-44 181.4 253 50.2
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.2e-43 179.9 119 84.0
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 6.4e-43 178.3 261 49.4
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 8.4e-43 177.9 249 49.4
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 4.2e-42 175.6 264 47.7
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 6.0e-41 171.8 266 46.2
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.0e-40 171.0 269 44.6
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.0e-40 171.0 261 48.7
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.0e-40 171.0 261 48.3
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 1.7e-40 170.2 275 46.2
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 8.7e-40 167.9 259 46.7
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.5e-39 167.2 262 46.2
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.5e-39 166.4 266 46.2
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 9.6e-39 164.5 262 43.1
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.3e-38 164.1 264 46.2
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 1.6e-38 163.7 261 46.0
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 1.6e-38 163.7 292 42.1
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 2.1e-38 163.3 260 47.3
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 8.1e-38 161.4 262 46.2
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 8.1e-38 161.4 238 47.1
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 8.1e-38 161.4 266 46.2
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 1.4e-37 160.6 264 46.2
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 2.4e-37 159.8 250 46.0
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.4e-37 159.8 250 46.0
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 3.1e-37 159.5 262 46.6
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 5.3e-37 158.7 267 43.1
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 5.3e-37 158.7 261 46.0
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.9e-37 158.3 250 43.6
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 9.0e-37 157.9 161 58.4
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 9.0e-37 157.9 267 43.1
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.5e-36 157.1 261 45.6
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.5e-36 157.1 228 46.5
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 2.0e-36 156.8 259 44.8
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.6e-36 156.4 250 43.6
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 3.4e-36 156.0 263 43.3
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 3.4e-36 156.0 252 45.6
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 3.4e-36 156.0 226 46.9
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.3e-35 154.1 267 44.9
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 1.3e-35 154.1 250 45.2
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.7e-35 153.7 260 44.6
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.7e-35 153.7 250 44.0
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.7e-35 153.7 230 48.7
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 1.7e-35 153.7 258 43.8
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 2.9e-35 152.9 253 45.8
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 4.9e-35 152.1 242 45.9
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 6.4e-35 151.8 248 44.4
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 8.4e-35 151.4 265 44.2
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.4e-35 151.4 249 45.4
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.4e-35 151.4 249 45.4
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 1.1e-34 151.0 260 44.2
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.1e-34 151.0 162 58.6
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 1.4e-34 150.6 283 43.1
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 1.9e-34 150.2 260 44.6
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 1.9e-34 150.2 248 44.0
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.9e-34 150.2 250 43.2
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.4e-34 149.8 247 44.5
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.4e-34 149.8 247 44.5
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 4.2e-34 149.1 250 45.2
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 4.2e-34 149.1 242 45.0
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 7.1e-34 148.3 252 44.8
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 9.3e-34 147.9 257 46.3
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 9.3e-34 147.9 261 42.9
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.2e-33 147.5 253 45.1
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.6e-33 147.1 181 53.0
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 1.6e-33 147.1 225 47.6
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.1e-33 146.7 244 43.0
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 2.7e-33 146.4 261 41.0
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 3.5e-33 146.0 262 42.0
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 4.6e-33 145.6 307 41.0
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 6.0e-33 145.2 267 41.9
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 1.0e-32 144.4 267 43.8
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 1.0e-32 144.4 267 43.8
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.3e-32 144.1 265 44.5
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 1.8e-32 143.7 247 47.0
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.8e-32 143.7 244 45.5
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 2.3e-32 143.3 266 43.2
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 3.9e-32 142.5 240 45.8
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.9e-32 142.5 239 45.2
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 5.1e-32 142.1 263 43.3
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 1.1e-31 141.0 258 45.3
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 1.1e-31 141.0 263 43.0
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 1.9e-31 140.2 154 57.8
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 1.9e-31 140.2 235 44.7
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 2.5e-31 139.8 259 42.5
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 2.5e-31 139.8 263 41.1
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 3.3e-31 139.4 234 45.7
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 3.3e-31 139.4 247 41.7
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 3.3e-31 139.4 246 44.3
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 3.3e-31 139.4 263 43.0
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 4.3e-31 139.0 152 53.9
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 4.3e-31 139.0 248 44.8
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 5.6e-31 138.7 197 48.7
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 5.6e-31 138.7 275 40.7
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 7.4e-31 138.3 153 56.2
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 1.3e-30 137.5 228 46.1
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 1.6e-30 137.1 252 40.5
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 1.6e-30 137.1 252 43.3
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 2.1e-30 136.7 234 45.3
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 4.8e-30 135.6 242 44.2
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 6.2e-30 135.2 181 50.3
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 1.4e-29 134.0 247 40.9
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 2.4e-29 133.3 261 42.5
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 3.1e-29 132.9 161 52.2
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 3.4e-28 129.4 170 50.0
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 4.5e-28 129.0 273 38.8
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.7e-27 127.1 256 42.6
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 4.9e-27 125.6 158 48.1
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 5.5e-26 122.1 174 48.9
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 9.3e-26 121.3 271 39.9
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 7.9e-25 118.2 240 40.4
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 7.9e-25 118.2 261 39.8
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.3e-24 117.5 136 53.7
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 8.7e-24 114.8 98 70.4
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.5e-23 114.0 242 38.4
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 3.3e-23 112.8 183 45.9
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 3.3e-23 112.8 203 40.4
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 4.3e-23 112.5 202 41.1
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.8e-22 109.0 154 46.1
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.4e-21 107.5 245 36.7
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 2.4e-21 106.7 175 45.1
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 6.9e-21 105.1 233 38.2
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 6.9e-21 105.1 176 44.3
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.6e-20 103.2 237 36.3
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 4.5e-20 102.4 236 38.1
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.5e-20 102.4 241 34.4
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 7.6e-20 101.7 230 33.0
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 7.6e-20 101.7 155 45.2
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 7.6e-20 101.7 229 35.8
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 1.7e-19 100.5 246 34.6
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 8.5e-19 98.2 148 43.9
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 9.3e-18 94.7 255 34.9
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.2e-17 94.4 245 34.3
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 3.6e-17 92.8 156 41.7
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 3.9e-16 89.4 337 29.1
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 1.1e-15 87.8 173 41.0
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.3e-14 84.3 239 34.7
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 4.8e-14 82.4 198 33.8
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 1.4e-13 80.9 241 33.2
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 1.4e-13 80.9 95 52.6
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 3.1e-13 79.7 146 39.0
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 2.6e-12 76.6 78 57.7
BolC7t41959H Brassica oleracea HOM05D003503 ORTHO05D003885 4.5e-12 75.9 120 43.3
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 5.9e-12 75.5 66 66.7
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.2e-09 67.8 99 46.5
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 1.6e-09 67.4 255 30.2
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 2.7e-09 66.6 53 66.0
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.8e-08 63.9 142 33.1
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.3e-08 63.5 104 44.2
C03p27190 Brassica napus HOM05D003503 ORTHO05D003885 1.1e-07 61.2 109 38.5
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 2.0e-07 60.5 160 33.8
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.6e-07 60.1 89 44.9
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 3.3e-07 59.7 157 31.2
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 1.3e-06 57.8 117 34.2
Os02g0591500 Oryza sativa ssp. japonica HOM05D020767 ORTHO05D003885 1.7e-06 57.4 173 30.6
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 6.3e-06 55.5 165 29.7


User provided reference genes

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