Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 4.9e-85 317.8 161 100.0
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 4.9e-85 317.8 161 100.0
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 4.9e-85 317.8 161 100.0
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 4.9e-85 317.8 161 100.0
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.4e-84 316.2 161 99.4
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 3.5e-83 311.6 161 97.5
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 3.0e-82 308.5 158 98.1
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 3.9e-82 308.1 161 96.3
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 3.9e-82 308.1 161 96.3
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 3.9e-82 308.1 161 96.3
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 6.6e-82 307.4 158 97.5
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 1.4e-79 299.7 161 95.0
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.4e-79 299.7 161 95.0
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 5.2e-79 297.7 161 93.2
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 8.9e-79 297.0 161 93.8
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 3.4e-78 295.0 161 91.9
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.1e-76 290.0 161 91.3
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.7e-75 285.4 161 88.2
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 3.5e-75 285.0 161 88.2
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 6.0e-75 284.3 161 88.2
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 7.3e-73 277.3 161 86.3
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 6.2e-72 274.2 161 83.9
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 2.3e-66 255.8 150 81.3
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 1.1e-65 253.4 161 75.8
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.4 161 75.8
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.4 161 75.8
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.4 161 75.8
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.4 161 75.8
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.4 161 75.8
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 1.5e-65 253.1 161 76.4
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 4.3e-65 251.5 150 80.0
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.6e-64 249.6 161 75.2
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 2.1e-64 249.2 159 74.8
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 2.1e-64 249.2 161 74.5
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.8e-64 248.8 150 80.0
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 3.6e-64 248.4 161 73.9
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 4.7e-64 248.1 159 74.8
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 4.7e-64 248.1 150 78.0
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 6.2e-64 247.7 143 85.3
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 8.1e-64 247.3 161 74.5
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 1.1e-63 246.9 159 73.6
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.1e-63 246.9 159 74.2
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.4e-63 246.5 150 78.7
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.4e-63 246.5 150 78.7
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.8e-63 246.1 161 73.9
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 3.1e-63 245.4 159 76.1
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 5.2e-63 244.6 161 73.3
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 6.9e-63 244.2 161 74.5
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 9.0e-63 243.8 161 74.5
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.2e-62 243.4 161 73.3
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.5e-62 243.0 159 74.2
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.0e-62 242.7 158 74.7
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.6e-62 242.3 150 77.3
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 5.8e-62 241.1 150 74.0
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 5.8e-62 241.1 161 72.0
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 5.8e-62 241.1 159 73.0
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.8e-62 241.1 155 73.5
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.3e-61 240.0 159 72.3
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 1.3e-61 240.0 155 75.5
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 1.3e-61 240.0 155 75.5
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.3e-61 240.0 158 74.7
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.7e-61 239.6 158 70.9
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.7e-61 239.6 161 72.0
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.7e-61 239.6 155 72.3
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.2e-61 239.2 155 72.9
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 2.9e-61 238.8 161 72.0
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 6.4e-61 237.7 161 72.0
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 6.4e-61 237.7 161 72.0
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 6.4e-61 237.7 158 74.1
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 8.4e-61 237.3 159 71.7
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 8.4e-61 237.3 156 71.2
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 8.4e-61 237.3 161 71.4
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.4e-60 236.5 157 71.3
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 1.9e-60 236.1 155 74.8
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.9e-60 236.1 156 71.8
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.9e-60 236.1 156 71.8
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 1.9e-60 236.1 158 74.1
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 2.4e-60 235.7 160 71.2
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 4.2e-60 235.0 158 74.1
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 4.2e-60 235.0 158 70.3
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.2e-60 235.0 158 69.6
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 7.1e-60 234.2 156 74.4
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 7.1e-60 234.2 159 71.1
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 9.3e-60 233.8 161 70.8
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 9.3e-60 233.8 158 74.1
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 1.6e-59 233.0 158 72.2
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.6e-59 233.0 150 74.7
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 2.7e-59 232.3 158 72.2
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 3.5e-59 231.9 159 69.8
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 4.6e-59 231.5 158 72.8
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 7.8e-59 230.7 159 69.8
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.0e-58 230.3 155 71.6
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.7e-58 229.6 159 71.7
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 3.9e-58 228.4 158 70.9
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 2.5e-57 225.7 155 70.3
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 3.3e-57 225.3 154 68.8
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.6e-56 223.0 150 68.0
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 1.6e-56 223.0 150 71.3
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 8.1e-56 220.7 134 78.4
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 8.1e-56 220.7 150 71.3
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 1.1e-55 220.3 150 69.3
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.4e-55 219.9 160 69.4
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.4e-55 219.9 160 69.4
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 1.4e-55 219.9 161 66.5
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 2.4e-55 219.2 158 67.1
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 3.1e-55 218.8 161 67.7
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 5.3e-55 218.0 161 66.5
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 6.9e-55 217.6 210 56.2
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.2e-54 216.9 161 67.1
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.5e-54 216.5 161 66.5
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 5.8e-54 214.5 135 76.3
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 9.9e-54 213.8 155 68.4
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 2.9e-53 212.2 157 64.3
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 1.9e-52 209.5 146 69.9
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.6e-51 206.5 145 70.3
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 2.7e-51 205.7 146 67.1
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 7.9e-51 204.1 125 77.6
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 7.9e-51 204.1 249 47.8
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 7.4e-49 197.6 101 100.0
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 2.1e-48 196.1 162 63.6
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.1e-47 193.7 122 77.0
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.8e-45 185.3 163 58.3
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 4.9e-45 184.9 210 48.6
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.1e-44 183.7 138 70.3
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 1.9e-44 183.0 154 56.5
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 2.4e-44 182.6 110 78.2
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.0e-42 177.2 124 69.4
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 8.2e-40 167.5 298 36.9
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 3.1e-39 165.6 188 47.9
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 4.9e-37 158.3 148 66.9
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.9e-36 156.4 143 58.7
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 4.2e-36 155.2 77 97.4
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 6.0e-35 151.4 155 51.0
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 2.5e-33 146.0 149 51.0
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 5.7e-33 144.8 149 50.3
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.8e-31 139.8 90 74.4
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.0e-30 136.3 148 52.7
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 5.9e-30 134.8 150 46.7
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 5.0e-29 131.7 109 61.5
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 2.5e-28 129.4 85 75.3
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 1.8e-26 123.2 143 46.2
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 1.1e-25 120.6 103 69.9
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 1.3e-24 117.1 78 79.5
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 9.1e-23 110.9 126 43.7
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.5e-20 102.8 72 68.1
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.5e-20 102.8 72 68.1
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 5.5e-20 101.7 65 72.3
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 7.2e-20 101.3 65 72.3
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.4e-18 97.1 64 71.9
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 5.1e-18 95.1 127 40.9
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-17 93.2 64 68.8
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 5.2e-10 68.6 146 34.9
AT3G57900 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 2.6e-09 66.2 96 43.8
SMO116G0085 Selaginella moellendorffii HOM05D004743 ORTHO05D005698 4.4e-09 65.5 145 30.3
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 1.6e-06 57.0 45 60.0
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 4.5e-06 55.5 45 57.8


User provided reference genes

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