Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 5.3e-168 594.3 315 100.0
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 2.1e-156 555.8 297 98.3
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 1.3e-153 546.6 304 95.7
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 1.3e-153 546.6 304 95.7
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 5.3e-152 541.2 305 94.8
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 3.2e-141 505.4 299 90.3
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.1e-138 496.9 302 88.4
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 2.0e-138 496.1 303 89.1
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.1e-132 476.1 298 86.6
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.0e-131 473.8 298 85.2
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 9.7e-130 467.2 299 85.6
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 2.2e-129 466.1 298 83.6
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.4e-123 446.8 303 78.9
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 8.6e-118 427.6 308 75.0
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.0e-115 420.6 296 74.7
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.0e-111 406.4 296 72.3
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.7e-110 403.3 308 71.4
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 3.3e-109 399.1 309 71.2
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.3e-109 398.7 305 70.2
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 5.6e-109 398.3 296 70.6
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 4.7e-108 395.2 296 69.6
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 5.2e-107 391.7 302 70.5
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 6.8e-107 391.3 296 69.9
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 6.8e-107 391.3 296 69.9
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 4.4e-106 388.7 296 69.6
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 4.4e-106 388.7 304 69.7
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 2.9e-105 386.0 303 68.3
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 8.3e-105 384.4 308 65.3
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 8.3e-105 384.4 293 69.6
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.8e-104 383.3 302 69.9
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 2.7e-103 379.4 303 67.3
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.7e-102 376.7 298 67.1
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 3.0e-102 375.9 298 64.8
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.5e-101 372.9 264 70.8
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 2.5e-101 372.9 300 67.0
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 3.3e-101 372.5 301 66.8
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 3.3e-101 372.5 301 66.8
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 4.3e-101 372.1 311 65.0
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 7.3e-101 371.3 260 71.5
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 9.5e-101 370.9 300 64.7
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.6e-100 370.2 303 64.7
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.6e-100 370.2 303 64.7
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.8e-100 369.4 301 66.1
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 6.2e-100 368.2 254 72.8
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 1.1e-99 367.5 306 63.7
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 3.1e-99 365.9 319 63.0
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 4.0e-99 365.5 331 61.0
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 6.8e-99 364.8 299 65.2
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.2e-98 364.0 276 67.8
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.5e-98 363.6 296 64.9
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 1.5e-98 363.6 259 69.5
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.6e-98 362.8 308 63.3
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 2.6e-98 362.8 287 65.9
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 4.4e-98 362.1 301 63.5
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 9.8e-98 360.9 290 64.1
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 2.2e-97 359.8 258 70.2
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 4.9e-97 358.6 246 73.2
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 4.9e-97 358.6 299 63.5
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 8.3e-97 357.8 295 63.4
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 8.3e-97 357.8 295 63.1
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.9e-96 356.7 304 60.9
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.9e-96 356.7 302 63.9
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 1.9e-96 356.7 246 69.1
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 3.2e-96 355.9 310 62.3
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 4.1e-96 355.5 291 64.3
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 5.4e-96 355.1 316 62.0
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 2.7e-95 352.8 297 63.0
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.7e-95 352.8 321 59.8
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.7e-95 352.8 321 59.8
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 4.6e-95 352.1 301 62.5
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 7.8e-95 351.3 246 71.5
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.0e-94 350.9 246 70.3
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.7e-94 350.1 294 62.2
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 1.7e-94 350.1 258 70.2
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 3.0e-94 349.4 243 71.2
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.9e-94 349.0 294 63.3
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 3.3e-93 345.9 251 66.9
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 2.1e-92 343.2 289 61.2
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.8e-92 342.8 296 64.2
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 3.6e-92 342.4 247 68.8
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 4.7e-92 342.0 293 63.5
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 5.2e-91 338.6 285 62.8
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 6.8e-91 338.2 244 68.0
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 2.6e-90 336.3 284 62.3
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 2.6e-90 336.3 230 72.2
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 4.4e-90 335.5 251 66.5
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 4.4e-90 335.5 312 58.0
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.3e-89 334.0 251 66.5
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 1.3e-89 334.0 267 64.0
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 6.4e-89 331.6 228 70.6
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.1e-88 330.9 297 58.2
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.1e-88 330.9 309 57.3
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.4e-88 330.5 244 64.8
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.9e-88 330.1 303 60.1
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 2.4e-88 329.7 279 63.8
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 5.4e-88 328.6 295 58.6
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.7e-87 326.2 296 59.5
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 3.9e-86 322.4 307 58.6
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 3.9e-86 322.4 288 59.7
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 3.9e-86 322.4 280 60.4
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.6e-86 321.6 291 60.1
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.5e-85 320.5 308 56.2
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 5.6e-85 318.5 276 64.5
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 3.6e-84 315.8 234 64.1
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 4.7e-84 315.5 293 57.7
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 5.2e-83 312.0 291 56.4
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 8.9e-83 311.2 245 65.3
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.2e-82 310.8 272 62.1
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 2.0e-82 310.1 246 61.4
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 2.6e-82 309.7 224 71.9
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 1.3e-81 307.4 223 67.3
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.7e-81 307.0 223 66.4
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 8.4e-81 304.7 235 65.1
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 9.2e-80 301.2 287 57.8
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.6e-79 300.4 286 54.9
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 7.8e-79 298.1 257 57.2
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.0e-78 297.7 286 54.2
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 2.3e-78 296.6 245 62.0
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 6.6e-78 295.0 302 54.3
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.1e-77 294.3 325 49.5
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 2.5e-77 293.1 250 62.4
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 9.6e-77 291.2 331 52.3
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 1.6e-76 290.4 226 66.8
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 8.1e-76 288.1 329 51.7
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.4e-75 286.6 243 61.3
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 5.8e-74 282.0 228 64.5
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.3e-73 280.8 248 59.7
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 3.8e-73 279.3 221 60.2
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.2e-71 274.2 222 64.9
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 2.7e-71 273.1 298 48.7
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 1.1e-67 261.2 268 55.6
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.3e-67 258.8 214 61.7
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.2e-66 257.7 256 57.0
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.8e-62 243.8 239 49.4
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.5e-61 240.7 305 42.0
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.5e-58 230.7 166 66.3
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 1.1e-56 224.6 190 64.2
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 2.4e-56 223.4 274 44.9
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.9e-54 216.1 394 37.1
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 1.6e-52 210.7 232 45.7
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 4.8e-52 209.1 208 55.8
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.5e-47 193.0 249 45.8
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.0e-46 191.4 129 71.3
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 9.7e-45 184.9 135 65.2
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 4.8e-44 182.6 172 50.6
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 5.9e-34 149.1 114 64.0
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 2.0e-29 134.0 118 54.2
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 9.7e-21 105.1 79 67.1
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 6.3e-20 102.4 74 70.3
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 8.2e-20 102.1 107 48.6
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 3.0e-14 83.6 70 55.7
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 5.7e-13 79.3 60 63.3
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.8e-11 74.3 189 33.9
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 1.3e-09 68.2 52 63.5
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 1.7e-09 67.8 148 34.5
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 2.2e-09 67.4 72 51.4
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 8.5e-09 65.5 106 37.7
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 8.5e-09 65.5 37 78.4
Hund23427 Selenicereus undatus HOM05D002234 ORTHO05D002254 3.6e-07 60.1 300 23.7
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 4.7e-07 59.7 210 25.7
DCAR_027858 Daucus carota HOM05D002234 ORTHO05D002254 4.0e-06 56.6 314 25.8
Ah.09g234470 Amaranthus hybridus HOM05D002234 ORTHO05D002254 6.8e-06 55.8 220 26.4
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 8.8e-06 55.5 215 25.6


User provided reference genes

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