Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 2.8e-160 568.5 283 100.0
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 9.0e-151 537.0 291 93.1
BcaC02g12456 Brassica carinata HOM05D005723 ORTHO05D005968 1.0e-141 506.9 283 91.2
BolC4t21962H Brassica oleracea HOM05D005723 ORTHO05D005968 1.0e-141 506.9 283 91.2
BraA05t19263Z Brassica rapa HOM05D005723 ORTHO05D005968 1.3e-141 506.5 284 91.5
C04p03240 Brassica napus HOM05D005723 ORTHO05D005968 8.4e-141 503.8 283 90.8
AT2G42070 Arabidopsis thaliana HOM05D005723 ORTHO05D005968 1.3e-136 490.0 287 88.2
AL4G40430 Arabidopsis lyrata HOM05D005723 ORTHO05D005968 1.6e-136 489.6 289 88.6
BcaB01g03439 Brassica carinata HOM05D005723 ORTHO05D005968 2.8e-136 488.8 287 86.4
BcaC01g05310 Brassica carinata HOM05D005723 ORTHO05D005968 8.2e-136 487.3 287 86.4
Carub.0004s2440 Capsella rubella HOM05D005723 ORTHO05D005968 8.2e-136 487.3 289 87.9
CARHR137150 Cardamine hirsuta HOM05D005723 ORTHO05D005968 8.2e-136 487.3 290 86.6
A03p23560 Brassica napus HOM05D005723 ORTHO05D005968 4.1e-135 485.0 287 86.8
BolC3t15179H Brassica oleracea HOM05D005723 ORTHO05D005968 1.5e-134 483.0 287 85.7
BraA03t11573Z Brassica rapa HOM05D005723 ORTHO05D005968 2.6e-134 482.3 287 86.4
Thhalv10017043m.g Eutrema salsugineum HOM05D005723 ORTHO05D005968 3.4e-134 481.9 288 86.1
Aa31LG1G24130 Aethionema arabicum HOM05D005723 ORTHO05D005968 7.6e-134 480.7 291 84.9
Sp4g24280 Schrenkiella parvula HOM05D005723 ORTHO05D005968 5.1e-130 468.0 291 83.8
C03p28100 Brassica napus HOM05D005723 ORTHO05D005968 8.2e-120 434.1 274 83.2
THA.LOC104802583 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 8.2e-120 434.1 297 75.4
THA.LOC104824477 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 8.0e-115 417.5 297 74.7
Gohir.A09G128200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 6.5e-109 397.9 286 69.9
Gohir.D09G124200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 2.7e-107 392.5 286 68.9
Gorai.006G143000 Gossypium raimondii HOM05D005723 ORTHO05D005968 1.4e-106 390.2 287 69.0
CiPaw.09G030000 Carya illinoinensis HOM05D005723 ORTHO05D005968 1.3e-104 383.6 297 67.0
Cfa020161 Carpinus fangiana HOM05D005723 ORTHO05D005968 9.1e-103 377.5 298 65.4
QL07p023897 Quercus lobata HOM05D005723 ORTHO05D005968 1.6e-102 376.7 300 65.3
Thecc.05G171800 Theobroma cacao HOM05D005723 ORTHO05D005968 1.6e-102 376.7 291 66.7
Atru.chr8.1119 Acer truncatum HOM05D005723 ORTHO05D005968 1.7e-101 373.2 301 64.5
FAN14G2504 Fragaria x ananassa HOM05D005723 ORTHO05D005968 5.0e-101 371.7 303 64.7
Manes.08G043200 Manihot esculenta HOM05D005723 ORTHO05D005968 5.0e-101 371.7 296 65.2
TWI53G1132 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 1.1e-100 370.5 300 64.3
RcHm_v2.0_Chr3g0479531 Rosa chinensis HOM05D005723 ORTHO05D005968 3.2e-100 369.0 298 65.4
FAN02G2166 Fragaria x ananassa HOM05D005723 ORTHO05D005968 2.1e-99 366.3 305 64.9
Hma1.2p1_0648F.1_g195110 Hydrangea macrophylla HOM05D005723 ORTHO05D005968 1.4e-98 363.6 297 65.3
Prupe.7G077500 Prunus persica HOM05D005723 ORTHO05D005968 1.8e-98 363.2 300 64.3
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 2.3e-98 362.8 200 83.5
Potri.016G045300 Populus trichocarpa HOM05D005723 ORTHO05D005968 3.0e-98 362.5 290 65.5
Actinidia17274 Actinidia chinensis HOM05D005723 ORTHO05D005968 5.2e-98 361.7 287 66.2
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 5.2e-98 361.7 294 64.3
Migut.K00036 Erythranthe guttata HOM05D005723 ORTHO05D005968 1.5e-97 360.1 300 63.3
MD12G1056700 Malus domestica HOM05D005723 ORTHO05D005968 2.0e-97 359.8 300 65.0
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 2.6e-97 359.4 203 79.8
Sabra06G0148000 Salix brachista HOM05D005723 ORTHO05D005968 4.4e-97 358.6 307 61.6
Potri.006G192800 Populus trichocarpa HOM05D005723 ORTHO05D005968 7.5e-97 357.8 301 63.1
EL10Ac3g06909 Beta vulgaris HOM05D005723 ORTHO05D005968 1.3e-96 357.1 287 65.5
Psat3g068400 Pisum sativum HOM05D005723 ORTHO05D005968 1.7e-96 356.7 284 66.2
Sc13g0002300 Simmondsia chinensis HOM05D005723 ORTHO05D005968 2.8e-96 355.9 286 65.0
CANSAT64G2568 Cannabis sativa HOM05D005723 ORTHO05D005968 8.3e-96 354.4 297 62.6
Lju124A25G33 Lonicera japonica HOM05D005723 ORTHO05D005968 1.8e-95 353.2 204 78.4
Sopen03g015150 Solanum pennellii HOM05D005723 ORTHO05D005968 2.4e-95 352.8 288 63.5
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 4.1e-95 352.1 285 64.9
Solyc03g062830.3 Solanum lycopersicum HOM05D005723 ORTHO05D005968 7.0e-95 351.3 288 63.2
HanXRQChr13g0390481 Helianthus annuus HOM05D005723 ORTHO05D005968 1.6e-94 350.1 285 62.8
Phvul.001G142700 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 2.7e-94 349.4 282 63.5
Hund24799 Selenicereus undatus HOM05D005723 ORTHO05D005968 4.5e-94 348.6 290 64.1
VMungo1383G0807 Vigna mungo HOM05D005723 ORTHO05D005968 5.9e-94 348.2 282 63.8
Ca_08526_v3 Cicer arietinum L. HOM05D005723 ORTHO05D005968 1.0e-93 347.4 286 64.3
Peaxi162Scf00258g00623 Petunia axillaris HOM05D005723 ORTHO05D005968 1.0e-93 347.4 294 60.9
GSVIVG01033492001 Vitis vinifera HOM05D005723 ORTHO05D005968 1.3e-93 347.1 202 78.2
Medtr7g093280 Medicago truncatula HOM05D005723 ORTHO05D005968 1.7e-93 346.7 282 63.8
Glyma.19G148100 Glycine max HOM05D005723 ORTHO05D005968 2.9e-93 345.9 266 65.0
Lj1g0008741 Lotus japonicus HOM05D005723 ORTHO05D005968 6.5e-93 344.7 260 66.5
FvH4_6g22180 Fragaria vesca HOM05D005723 ORTHO05D005968 8.6e-93 344.4 277 67.9
MELO3C009621.2 Cucumis melo HOM05D005723 ORTHO05D005968 1.5e-92 343.6 310 61.0
Lalb_Chr18g0047891 Lupinus albus HOM05D005723 ORTHO05D005968 1.9e-92 343.2 242 70.2
TPR.G18229 Trifolium pratense HOM05D005723 ORTHO05D005968 2.5e-92 342.8 285 63.2
Sed0013306 Sechium edule HOM05D005723 ORTHO05D005968 4.2e-92 342.0 306 60.5
Glyma.09G111000 Glycine max HOM05D005723 ORTHO05D005968 2.8e-91 339.3 213 73.7
FAN05G3703 Fragaria x ananassa HOM05D005723 ORTHO05D005968 4.7e-91 338.6 289 64.7
Nn2g15696 Nelumbo nucifera HOM05D005723 ORTHO05D005968 1.0e-90 337.4 297 57.9
Nitab4.5_0000324g0030 Nicotiana tabacum HOM05D005723 ORTHO05D005968 2.3e-90 336.3 200 75.5
Phvul.007G260200 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 3.0e-90 335.9 213 72.8
SGA_v2.0_scaffold274G46488 Striga asiatica HOM05D005723 ORTHO05D005968 5.2e-90 335.1 293 62.1
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 1.2e-89 334.0 228 70.2
Aqoxy1G00026 Aquilegia oxysepala HOM05D005723 ORTHO05D005968 2.0e-89 333.2 196 75.5
Rhsim04G0096600 Rhododendron simsii HOM05D005723 ORTHO05D005968 6.3e-88 328.2 272 64.0
Cc06_g15920 Coffea canephora HOM05D005723 ORTHO05D005968 3.1e-87 325.9 317 56.8
Ciclev10013558m.g Citrus clementina HOM05D005723 ORTHO05D005968 5.4e-87 325.1 251 64.9
arahy.Tifrunner.gnm1.ann1.USMU0G Arachis hypogaea HOM05D005723 ORTHO05D005968 2.7e-86 322.8 269 63.2
PGR142G4063 Punica granatum HOM05D005723 ORTHO05D005968 3.5e-86 322.4 271 61.6
Glyma.03G145000 Glycine max HOM05D005723 ORTHO05D005968 1.7e-85 320.1 264 62.9
Lsat_1_v5_gn_5_163580 Lactuca sativa HOM05D005723 ORTHO05D005968 1.9e-84 316.6 294 57.8
MD14G1055000 Malus domestica HOM05D005723 ORTHO05D005968 5.6e-84 315.1 280 63.6
CDE05G2791 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 9.5e-84 314.3 255 62.7
Dinv14303 Davidia involucrata HOM05D005723 ORTHO05D005968 2.1e-83 313.2 260 65.8
MBI08_g23085_MAGBIO Magnolia biondii HOM05D005723 ORTHO05D005968 1.0e-82 310.8 248 63.3
Zm00001eb320790 Zea mays HOM05D005723 ORTHO05D005968 1.0e-82 310.8 210 68.6
ClCG10G017570 Citrullus lanatus HOM05D005723 ORTHO05D005968 6.8e-82 308.1 308 54.9
MSTRG.6477 Avicennia marina HOM05D005723 ORTHO05D005968 1.2e-81 307.4 292 56.2
CDE05G1067 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 2.0e-81 306.6 255 61.2
Cpa.g.sc85.50 Carica papaya HOM05D005723 ORTHO05D005968 4.4e-81 305.4 295 60.0
Nitab4.5_0002488g0020 Nicotiana tabacum HOM05D005723 ORTHO05D005968 7.5e-81 304.7 277 59.9
Zm00001eb104410 Zea mays HOM05D005723 ORTHO05D005968 2.9e-80 302.8 195 70.8
SalBow1G1145 Salvia bowleyana HOM05D005723 ORTHO05D005968 4.9e-80 302.0 260 63.1
Oeu024483.2 Olea europaea HOM05D005723 ORTHO05D005968 8.3e-80 301.2 292 56.2
DCAR_019848 Daucus carota HOM05D005723 ORTHO05D005968 3.2e-79 299.3 297 55.9
HPP92_009024 Vanilla planifolia HOM05D005723 ORTHO05D005968 1.5e-76 290.4 210 64.8
ATR0807G138 Amborella trichopoda HOM05D005723 ORTHO05D005968 1.2e-75 287.3 236 61.9
Pp3c12_9930 Physcomitrium patens HOM05D005723 ORTHO05D005968 6.2e-75 285.0 194 67.0
PSO339G0271 Papaver somniferum HOM05D005723 ORTHO05D005968 3.1e-74 282.7 297 52.2
PSO384G0309 Papaver somniferum HOM05D005723 ORTHO05D005968 3.1e-74 282.7 296 51.4
CsaV3_3G038770 Cucumis sativus L. HOM05D005723 ORTHO05D005968 9.8e-73 277.7 271 57.6
AUR62015361 Chenopodium quinoa HOM05D005723 ORTHO05D005968 2.1e-70 270.0 157 79.6
arahy.Tifrunner.gnm1.ann1.4E6ATU Arachis hypogaea HOM05D005723 ORTHO05D005968 6.6e-69 265.0 261 57.5
SMO358G0738 Selaginella moellendorffii HOM05D005723 ORTHO05D005968 1.6e-67 260.4 195 62.1
HanXRQChr01g0009761 Helianthus annuus HOM05D005723 ORTHO05D005968 3.6e-67 259.2 157 73.9
ECA248G2266 Erigeron canadensis HOM05D005723 ORTHO05D005968 8.1e-67 258.1 157 75.2
Oeu034265.1 Olea europaea HOM05D005723 ORTHO05D005968 3.1e-66 256.1 156 75.6
AUR62012024 Chenopodium quinoa HOM05D005723 ORTHO05D005968 2.0e-65 253.4 151 78.1
arahy.Tifrunner.gnm1.ann1.WEU379 Arachis hypogaea HOM05D005723 ORTHO05D005968 5.4e-63 245.4 329 46.2
Cre06.g285200 Chlamydomonas reinhardtii HOM05D005723 ORTHO05D005968 3.0e-61 239.6 245 48.2
unitig_748.g7589 Utricularia gibba HOM05D005723 ORTHO05D005968 4.9e-56 222.2 141 74.5
TWI74G1261 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 4.1e-55 219.2 259 49.4
SEGI_25574 Sequoiadendron giganteum HOM05D005723 ORTHO05D005968 1.6e-54 217.2 153 71.2
PRCOL_00004505 Prasinoderma coloniale HOM05D005723 ORTHO05D005968 6.0e-54 215.3 197 51.8
Actinidia38586 Actinidia chinensis HOM05D005723 ORTHO05D005968 2.3e-53 213.4 169 62.7
Haze_19996 Corylus avellana HOM05D005723 ORTHO05D005968 8.7e-53 211.5 124 80.6
C05p20370 Brassica napus HOM05D005723 ORTHO05D005968 5.2e-50 202.2 115 88.7
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 5.2e-50 202.2 115 88.7
Sed0026560 Sechium edule HOM05D005723 ORTHO05D005968 1.3e-48 197.6 194 53.1
MSTRG.10844 Avicennia marina HOM05D005723 ORTHO05D005968 3.8e-48 196.1 124 75.8
HPP92_009080 Vanilla planifolia HOM05D005723 ORTHO05D005968 5.1e-45 185.7 133 64.7
Os09g0553300 Oryza sativa ssp. japonica HOM05D005723 ORTHO05D005968 1.1e-44 184.5 111 73.9
arahy.Tifrunner.gnm1.ann1.HLHI9C Arachis hypogaea HOM05D005723 ORTHO05D005968 2.8e-43 179.9 117 75.2
AagrBONN_evm.TU.Sc2ySwM_117.3227 Anthoceros agrestis HOM05D005723 ORTHO05D005968 6.2e-43 178.7 139 61.9
Mapoly0013s0082 Marchantia polymorpha HOM05D005723 ORTHO05D005968 7.6e-41 171.8 134 61.2
Pp3c3_14150 Physcomitrium patens HOM05D005723 ORTHO05D005968 9.9e-33 144.8 183 45.9
CBR_g29504 Chara braunii HOM05D005723 ORTHO05D005968 1.4e-31 141.0 159 44.7
Gohir.A10G137800 Gossypium hirsutum HOM05D005723 ORTHO05D005968 5.5e-31 139.0 90 77.8
BolC3t15180H Brassica oleracea HOM05D005723 ORTHO05D005968 7.9e-30 135.2 78 85.9
Gohir.A13G075901 Gossypium hirsutum HOM05D005723 ORTHO05D005968 3.3e-28 129.8 110 63.6
BcaC05g26057 Brassica carinata HOM05D005723 ORTHO05D005968 2.7e-22 110.2 63 85.7
MCO15G614 Micromonas commoda HOM05D005723 ORTHO05D005968 1.0e-16 91.7 167 32.9
vmacro09121 Vaccinium macrocarpon HOM05D005723 ORTHO05D005968 5.0e-16 89.4 112 50.0
Haze_19995 Corylus avellana HOM05D005723 ORTHO05D005968 1.9e-15 87.4 91 52.7
FAN09G1257 Fragaria x ananassa HOM05D005723 ORTHO05D005968 4.8e-11 72.8 132 44.7
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 3.2e-07 60.1 180 28.9
Peaxi162Scf00006g00314 Petunia axillaris HOM05D000829 ORTHO05D000690 3.2e-07 60.1 165 29.1
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 4.2e-07 59.7 139 29.5
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 4.2e-07 59.7 179 27.4
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 5.5e-07 59.3 181 27.6
CAN.G85.14 Capsicum annuum HOM05D000829 ORTHO05D000690 7.2e-07 58.9 165 29.1
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 7.2e-07 58.9 137 30.7
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 7.2e-07 58.9 137 30.7
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 7.2e-07 58.9 137 30.7
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 9.4e-07 58.5 181 28.7
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 9.4e-07 58.5 136 30.9
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.2e-06 58.2 186 26.9
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.2e-06 58.2 137 29.2
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.2e-06 58.2 137 29.9
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 1.2e-06 58.2 136 30.9
Solyc12g015700.3 Solanum lycopersicum HOM05D000829 ORTHO05D000690 1.2e-06 58.2 164 28.7
Sopen12g007620 Solanum pennellii HOM05D000829 ORTHO05D000690 1.2e-06 58.2 164 28.7
PGSC0003DMG400029796 Solanum tuberosum HOM05D000829 ORTHO05D000690 1.2e-06 58.2 164 28.7
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 2.1e-06 57.4 183 29.0
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 2.1e-06 57.4 181 29.3
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 2.7e-06 57.0 181 29.3
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 2.7e-06 57.0 181 29.3
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 2.7e-06 57.0 183 29.0
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 2.7e-06 57.0 177 27.1
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 3.6e-06 56.6 180 28.3
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 3.6e-06 56.6 181 29.3
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 3.6e-06 56.6 140 32.1
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 4.7e-06 56.2 189 30.2
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 4.7e-06 56.2 181 29.8
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 4.7e-06 56.2 181 29.8
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 4.7e-06 56.2 200 29.5
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 4.7e-06 56.2 180 28.9
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 4.7e-06 56.2 138 29.7
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 4.7e-06 56.2 181 27.6
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.7e-06 56.2 183 30.6
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 6.1e-06 55.8 199 27.6
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 6.1e-06 55.8 183 29.5
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 6.1e-06 55.8 181 30.4
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 6.1e-06 55.8 181 30.4
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 6.1e-06 55.8 183 30.6
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 6.1e-06 55.8 181 27.6
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.9e-06 55.5 181 30.4
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.9e-06 55.5 181 30.4
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 7.9e-06 55.5 183 29.0
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 7.9e-06 55.5 142 29.6


User provided reference genes

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