Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 2.7e-73 278.5 131 100.0
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 2.7e-73 278.5 131 100.0
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 1.3e-64 249.6 131 91.6
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 1.3e-64 249.6 131 91.6
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 4.7e-62 241.1 131 90.8
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 4.7e-62 241.1 131 90.8
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 9.2e-58 226.9 131 84.7
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 4.3e-55 218.0 131 80.9
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 3.6e-54 214.9 131 80.2
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 3.6e-54 214.9 131 80.2
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 2.2e-51 205.7 131 77.1
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 5.4e-50 201.1 132 76.5
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 1.0e-48 196.8 117 82.1
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 3.1e-45 185.3 129 72.1
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 3.1e-45 185.3 129 72.1
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 2.2e-43 179.1 127 70.9
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.2e-43 179.1 128 72.7
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 9.3e-42 173.7 127 69.3
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 7.8e-41 170.6 131 64.9
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.5e-39 166.4 119 68.1
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 2.6e-36 155.6 122 63.9
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 7.1e-34 147.5 128 60.9
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 5.6e-31 137.9 119 58.8
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 1.3e-30 136.7 128 58.6
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 9.3e-26 120.6 128 51.6
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 1.6e-25 119.8 96 61.5
Carub.0006s3296 Capsella rubella HOM05D004407 ORTHO05D005074 3.5e-25 118.6 130 54.6
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 4.6e-25 118.2 95 61.1
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 3.9e-24 115.2 96 60.4
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 3.9e-24 115.2 96 60.4
Carub.0004s2401 Capsella rubella HOM05D004407 ORTHO05D005074 8.7e-24 114.0 113 59.3
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 2.4e-21 105.9 136 44.1
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 4.0e-21 105.1 139 43.2
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 4.0e-21 105.1 138 44.2
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 6.9e-21 104.4 96 53.1
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.2e-20 103.6 141 44.0
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 2.6e-20 102.4 144 43.8
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 4.5e-20 101.7 137 46.0
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 5.8e-20 101.3 138 42.8
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 7.6e-20 100.9 138 46.4
Carub.0006s3434 Capsella rubella HOM05D004407 ORTHO05D005074 1.0e-19 100.5 127 49.6
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 1.0e-19 100.5 137 43.8
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.0e-19 100.5 145 43.4
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 1.3e-19 100.1 136 44.1
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 1.3e-19 100.1 130 46.9
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 2.2e-19 99.4 142 43.7
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 2.9e-19 99.0 101 49.5
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 2.9e-19 99.0 126 45.2
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 2.9e-19 99.0 89 55.1
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 4.9e-19 98.2 139 44.6
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 8.4e-19 97.4 132 43.2
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.1e-18 97.1 138 43.5
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 1.4e-18 96.7 137 42.3
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 1.4e-18 96.7 133 42.9
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 1.9e-18 96.3 137 42.3
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.9e-18 96.3 134 45.5
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 3.2e-18 95.5 148 40.5
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.2e-18 95.5 89 52.8
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 4.2e-18 95.1 97 48.5
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 4.2e-18 95.1 140 42.1
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 4.2e-18 95.1 138 43.5
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.2e-18 95.1 138 42.0
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 4.2e-18 95.1 135 45.2
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 4.2e-18 95.1 135 45.2
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 4.2e-18 95.1 128 43.8
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 5.5e-18 94.7 105 45.7
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 5.5e-18 94.7 129 42.6
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 7.1e-18 94.4 140 44.3
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 7.1e-18 94.4 139 45.3
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 7.1e-18 94.4 139 42.4
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 7.1e-18 94.4 97 48.5
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 7.1e-18 94.4 128 43.8
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 7.1e-18 94.4 143 41.3
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 1.2e-17 93.6 137 40.9
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.2e-17 93.6 138 42.0
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 1.2e-17 93.6 139 42.4
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 1.2e-17 93.6 139 41.7
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.6e-17 93.2 136 41.2
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 2.1e-17 92.8 123 44.7
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 2.1e-17 92.8 109 47.7
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 2.1e-17 92.8 87 51.7
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 2.7e-17 92.4 112 46.4
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.7e-17 92.4 139 41.0
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 2.7e-17 92.4 89 51.7
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 3.5e-17 92.0 128 42.2
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 4.6e-17 91.7 135 43.7
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 4.6e-17 91.7 104 51.0
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 6.0e-17 91.3 89 50.6
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.0e-17 91.3 87 52.9
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.0e-17 91.3 87 52.9
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.0e-17 91.3 87 52.9
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 6.0e-17 91.3 128 43.0
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.9e-17 90.9 85 54.1
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.9e-17 90.9 85 54.1
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.0e-16 90.5 85 54.1
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.3e-16 90.1 140 42.1
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 1.3e-16 90.1 139 41.7
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.3e-16 90.1 137 42.3
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.3e-16 90.1 89 51.7
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 1.8e-16 89.7 140 41.4
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 1.8e-16 89.7 87 49.4
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 2.3e-16 89.4 87 49.4
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 2.3e-16 89.4 89 49.4
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 2.3e-16 89.4 86 50.0
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 2.3e-16 89.4 96 49.0
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 2.3e-16 89.4 100 51.0
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 3.0e-16 89.0 140 41.4
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 3.9e-16 88.6 119 42.0
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.1e-16 88.2 85 52.9
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 6.7e-16 87.8 136 41.2
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.7e-16 87.8 87 51.7
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 8.7e-16 87.4 135 43.7
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.1e-15 87.0 129 40.3
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 1.5e-15 86.7 139 40.3
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 1.9e-15 86.3 128 43.0
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.3e-15 85.5 94 48.9
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 4.3e-15 85.1 89 46.1
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 1.6e-14 83.2 84 51.2
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 3.7e-14 82.0 139 38.1
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 3.7e-14 82.0 129 41.9
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 4.8e-14 81.6 136 40.4
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 8.2e-14 80.9 129 41.9
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 1.4e-13 80.1 129 43.4
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 1.4e-13 80.1 136 41.2
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 1.8e-13 79.7 130 39.2
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 2.4e-13 79.3 86 50.0
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 2.4e-13 79.3 138 39.9
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 4.1e-13 78.6 140 35.0
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 6.9e-13 77.8 113 40.7
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 6.9e-13 77.8 130 38.5
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 6.9e-13 77.8 120 41.7
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 9.0e-13 77.4 137 38.0
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.5e-12 76.6 118 42.4
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.5e-12 76.6 118 42.4
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.5e-12 76.6 119 42.9
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 2.6e-12 75.9 141 37.6
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.6e-12 75.9 153 34.6
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 4.5e-12 75.1 93 47.3
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 7.6e-12 74.3 87 46.0
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 2.2e-11 72.8 138 36.2
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 2.9e-11 72.4 134 37.3
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 3.8e-11 72.0 124 36.3
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 5.0e-11 71.6 142 38.0
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 6.5e-11 71.2 141 39.7
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.1e-10 70.5 87 42.5
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.4e-10 70.1 142 38.0
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.9e-10 69.7 107 39.3
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 2.5e-10 69.3 89 40.4
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 2.5e-10 69.3 143 35.7
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 7.2e-10 67.8 130 38.5
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 1.2e-09 67.0 149 32.2
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 1.2e-09 67.0 120 38.3
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.1e-09 66.2 130 37.7
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 2.1e-09 66.2 144 36.1
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 6.1e-09 64.7 87 40.2
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 6.1e-09 64.7 87 40.2
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.0e-08 63.9 72 45.8
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 1.5e-07 60.1 87 41.4
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 7.4e-07 57.8 65 49.2
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.2e-06 56.2 84 39.3
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 6.3e-06 54.7 132 33.3


User provided reference genes

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