Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 5.0e-238 827.4 423 100.0
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 1.1e-234 816.2 423 98.6
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 9.7e-234 813.1 423 98.3
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 1.1e-232 809.7 423 97.6
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 3.1e-232 808.1 423 98.1
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.4e-216 756.1 431 91.0
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 7.7e-215 750.4 432 89.6
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 2.9e-214 748.4 432 89.6
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 5.0e-214 747.7 432 89.8
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 2.5e-213 745.3 430 89.3
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 2.3e-211 738.8 431 88.4
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 7.8e-207 723.8 423 87.5
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 7.8e-207 723.8 423 87.5
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 7.8e-207 723.8 423 87.5
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 1.3e-206 723.0 423 87.5
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.7e-206 722.6 427 86.7
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 1.5e-205 719.5 426 87.6
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.5e-205 719.5 424 88.0
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 1.9e-205 719.2 423 87.0
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 1.9e-205 719.2 423 87.0
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 1.9e-205 719.2 430 86.7
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 4.3e-205 718.0 426 87.3
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 5.6e-205 717.6 427 86.2
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.0e-203 711.8 423 86.5
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 8.9e-203 710.3 423 86.8
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.2e-202 709.9 425 86.4
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 2.0e-202 709.1 391 90.8
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.8e-200 702.6 429 84.8
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.5e-194 682.9 477 77.6
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 1.7e-190 669.5 423 82.3
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.4e-184 649.8 428 76.2
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 4.1e-184 648.3 428 76.9
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.2e-183 646.7 428 76.2
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 1.6e-183 646.4 420 76.7
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 1.0e-182 643.7 389 81.7
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 5.1e-182 641.3 425 76.0
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 8.6e-182 640.6 427 76.8
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 1.1e-181 640.2 425 76.2
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.1e-181 640.2 430 75.6
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 1.9e-181 639.4 425 75.8
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 2.5e-181 639.0 424 76.2
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 4.3e-181 638.3 424 76.7
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 4.3e-181 638.3 424 75.2
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 5.6e-181 637.9 423 76.6
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 5.6e-181 637.9 426 76.5
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 9.5e-181 637.1 423 75.9
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 1.2e-180 636.7 420 76.0
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 1.2e-180 636.7 424 76.2
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 1.6e-180 636.3 425 75.5
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.6e-180 636.3 423 75.7
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 1.6e-180 636.3 427 76.3
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 8.1e-180 634.0 424 75.7
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.1e-179 633.6 429 75.1
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 1.4e-179 633.3 428 75.9
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 1.8e-179 632.9 427 76.6
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 3.1e-179 632.1 423 75.9
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 4.0e-179 631.7 427 75.2
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 6.8e-179 630.9 426 75.6
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 1.2e-178 630.2 425 75.5
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 3.4e-178 628.6 426 74.6
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 4.4e-178 628.2 389 79.9
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 1.7e-177 626.3 428 74.5
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 2.9e-177 625.5 423 75.2
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 2.9e-177 625.5 389 79.2
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 3.8e-177 625.2 429 75.5
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.8e-177 625.2 423 74.9
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 6.4e-177 624.4 424 74.8
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 6.4e-177 624.4 423 75.2
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.1e-176 623.6 423 74.7
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 1.1e-176 623.6 424 74.1
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 1.1e-176 623.6 384 80.2
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 1.1e-176 623.6 426 72.8
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.4e-176 623.2 385 80.5
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 2.4e-176 622.5 424 73.8
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 2.4e-176 622.5 426 72.8
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 3.2e-176 622.1 416 76.2
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 3.2e-176 622.1 424 75.5
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 4.1e-176 621.7 425 74.4
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 7.1e-176 620.9 423 73.5
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.6e-175 619.8 423 74.7
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 7.8e-175 617.5 423 75.2
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 2.3e-174 615.9 423 72.8
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 3.0e-174 615.5 423 74.2
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 3.9e-174 615.1 389 78.4
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 5.1e-174 614.8 438 72.8
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 6.6e-174 614.4 389 77.6
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 8.7e-174 614.0 423 73.8
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.1e-173 613.6 423 73.5
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 1.1e-173 613.6 424 74.3
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 3.3e-173 612.1 389 77.4
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 4.3e-173 611.7 426 72.1
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 9.6e-173 610.5 404 75.0
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 2.1e-172 609.4 390 77.9
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 6.2e-172 607.8 422 72.7
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 6.2e-172 607.8 422 72.7
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.1e-171 607.1 399 75.2
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 2.4e-171 605.9 406 76.6
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.1e-171 605.5 440 71.1
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 4.0e-171 605.1 427 73.1
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 5.2e-171 604.7 322 94.1
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 5.2e-171 604.7 426 72.5
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 9.0e-171 604.0 423 72.1
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.2e-170 603.6 430 70.9
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 3.8e-169 598.6 407 74.7
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 3.8e-169 598.6 423 71.6
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 8.4e-169 597.4 419 73.5
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 2.4e-168 595.9 423 71.4
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 3.2e-168 595.5 403 75.4
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 4.2e-168 595.1 417 72.7
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 9.3e-168 594.0 421 72.9
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.2e-167 593.6 420 72.4
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.3e-166 589.3 430 71.6
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 3.9e-166 588.6 427 72.1
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 1.1e-165 587.0 354 81.6
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 1.1e-165 587.0 370 77.8
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.9e-165 586.3 391 76.7
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.5e-165 585.9 405 73.8
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 3.3e-165 585.5 408 72.8
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 9.6e-165 583.9 407 73.0
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.4e-163 580.1 427 68.9
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.8e-163 579.7 386 76.7
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 4.0e-163 578.6 371 76.5
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 4.2e-160 568.5 335 82.4
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 3.0e-158 562.4 379 75.2
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 6.7e-158 561.2 423 69.5
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 4.3e-157 558.5 420 67.6
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 1.6e-156 556.6 416 70.4
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 2.8e-156 555.8 423 67.4
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 3.7e-156 555.4 431 67.1
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 6.2e-156 554.7 445 65.4
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 6.2e-156 554.7 389 71.2
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 1.1e-155 553.9 368 73.4
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 2.4e-155 552.7 396 71.2
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.4e-152 543.5 335 86.0
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.8e-150 536.6 452 64.2
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 4.0e-147 525.4 315 82.9
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 7.6e-146 521.2 387 66.9
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 1.6e-143 513.5 412 66.7
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 1.3e-142 510.4 451 63.4
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 2.8e-140 502.7 424 63.2
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 3.1e-139 499.2 347 73.5
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 7.6e-138 494.6 443 61.6
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 5.1e-134 481.9 402 61.7
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 5.3e-131 471.9 423 58.4
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 2.6e-130 469.5 367 68.1
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 5.7e-125 451.8 389 59.9
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.9e-121 439.5 366 65.3
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 3.8e-121 439.1 408 60.8
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 6.7e-118 428.3 231 92.2
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 2.2e-113 413.3 241 84.2
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.2e-112 409.5 335 64.8
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 6.7e-110 401.7 271 74.2
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 4.5e-98 362.5 390 50.8
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.0e-97 361.3 407 49.1
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.1e-96 357.8 211 83.9
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 3.8e-89 332.8 390 49.5
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 2.6e-85 320.1 273 60.1
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 2.3e-78 297.0 196 74.0
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 4.9e-76 289.3 351 52.7
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 7.5e-69 265.4 151 84.8
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 8.1e-63 245.4 302 46.0
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 4.0e-62 243.0 222 59.9
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 2.0e-61 240.7 381 38.8
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 3.6e-55 219.9 214 55.1
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.7e-52 211.1 304 41.1
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 5.6e-48 196.1 120 78.3
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 4.8e-47 193.0 182 57.7
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 6.2e-47 192.6 425 35.3
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 1.9e-43 181.0 119 82.4
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 5.5e-35 152.9 120 70.8
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 2.9e-28 130.6 134 53.7
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 9.3e-27 125.6 75 80.0
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 2.7e-26 124.0 72 83.3
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.0e-21 107.8 75 68.0
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 5.9e-21 106.3 85 60.0
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 1.4e-19 101.7 61 73.8
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 5.5e-19 99.8 74 73.0
BcaNung06569 Brassica carinata HOM05D003740 ORTHO05D027079 1.3e-15 88.6 83 63.9
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.8e-15 87.4 54 72.2
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 2.0e-13 81.3 60 65.0
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 6.5e-12 76.3 123 40.7
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 8.8e-09 65.9 55 67.3
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 9.7e-08 62.4 35 82.9
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 1.8e-06 58.2 137 32.8


User provided reference genes

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