Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 9.1e-162 573.5 297 100.0
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.4e-149 533.1 283 98.2
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 2.6e-148 528.9 296 94.6
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 1.7e-144 516.2 284 96.5
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 9.2e-138 493.8 325 82.8
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 6.8e-133 477.6 284 88.4
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.7e-131 473.0 284 88.7
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.3e-125 452.6 283 83.0
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.2e-124 450.3 283 82.7
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.3e-123 446.8 283 82.3
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 4.9e-123 444.9 283 82.0
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.1e-117 427.2 288 78.8
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 6.8e-117 424.5 287 77.7
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 8.9e-117 424.1 288 78.5
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 4.4e-116 421.8 288 77.8
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 4.4e-116 421.8 288 78.5
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 3.7e-115 418.7 288 77.1
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 8.3e-115 417.5 288 77.1
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 1.4e-114 416.8 288 77.8
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 1.0e-112 410.6 301 74.8
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.7e-112 409.8 301 73.8
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 3.9e-112 408.7 300 74.3
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 3.9e-112 408.7 300 74.3
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 5.1e-112 408.3 300 74.7
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 6.6e-112 407.9 283 75.6
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 8.6e-112 407.5 283 76.3
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.4e-109 399.4 290 73.4
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.0e-108 396.4 290 73.4
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 5.1e-104 381.7 288 69.4
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 6.6e-104 381.3 288 70.5
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 2.5e-103 379.4 288 69.1
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 5.6e-103 378.3 286 70.6
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 7.3e-103 377.9 287 71.1
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 2.1e-102 376.3 287 69.7
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 2.8e-102 375.9 288 69.4
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 3.6e-102 375.6 288 68.8
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 6.2e-102 374.8 288 68.1
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 8.1e-102 374.4 289 69.6
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 1.1e-101 374.0 289 68.9
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 1.1e-101 374.0 286 69.2
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 2.4e-101 372.9 284 70.1
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 4.0e-101 372.1 287 67.9
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 6.9e-101 371.3 283 69.3
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 9.0e-101 370.9 290 66.6
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 2.0e-100 369.8 289 68.5
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 2.0e-100 369.8 289 68.5
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 2.0e-100 369.8 289 69.2
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 2.0e-100 369.8 289 69.2
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.6e-100 369.4 287 68.3
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 2.6e-100 369.4 289 67.5
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 3.4e-100 369.0 290 68.3
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 4.4e-100 368.6 291 67.4
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 5.8e-100 368.2 287 68.3
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 7.6e-100 367.9 288 67.7
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 7.6e-100 367.9 282 68.8
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 9.9e-100 367.5 287 70.0
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 1.7e-99 366.7 287 66.9
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 2.2e-99 366.3 287 67.2
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 3.8e-99 365.5 290 67.2
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 3.8e-99 365.5 287 66.9
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 4.9e-99 365.2 290 67.9
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 4.9e-99 365.2 290 67.9
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 1.4e-98 363.6 331 60.4
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 1.4e-98 363.6 289 66.8
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 1.9e-98 363.2 287 67.2
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 1.9e-98 363.2 287 66.6
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 7.1e-98 361.3 289 67.1
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 9.3e-98 360.9 289 68.2
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 9.3e-98 360.9 287 66.2
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.6e-97 360.1 288 67.7
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 2.1e-97 359.8 289 66.4
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 3.5e-97 359.0 289 66.4
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 4.6e-97 358.6 285 66.3
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 7.8e-97 357.8 291 65.6
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.3e-96 357.1 313 62.9
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 2.3e-96 356.3 289 65.4
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 2.3e-96 356.3 291 66.7
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 4.3e-95 352.1 290 63.8
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 5.6e-95 351.7 317 61.5
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 9.6e-95 350.9 293 64.8
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 8.1e-94 347.8 293 62.8
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 8.1e-94 347.8 290 63.1
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 1.1e-93 347.4 281 64.8
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 1.4e-93 347.1 292 64.4
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 5.3e-93 345.1 291 63.2
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 5.3e-93 345.1 285 66.0
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 6.9e-93 344.7 291 64.3
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 6.9e-93 344.7 288 64.2
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 1.5e-92 343.6 286 63.6
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 2.0e-92 343.2 283 63.3
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 4.5e-92 342.0 290 61.4
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 5.8e-92 341.7 314 59.6
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 5.8e-92 341.7 290 62.4
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 9.9e-92 340.9 286 62.6
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 3.8e-91 339.0 288 63.2
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 2.4e-90 336.3 291 61.5
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 2.1e-89 333.2 287 63.8
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 1.3e-86 323.9 291 60.1
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 3.7e-86 322.4 315 57.5
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 3.7e-86 322.4 289 62.6
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 4.8e-86 322.0 347 53.0
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 5.3e-85 318.5 291 59.1
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 3.4e-84 315.8 288 58.7
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 9.9e-84 314.3 287 59.9
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 2.9e-83 312.8 293 57.3
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 2.9e-83 312.8 287 59.2
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 5.5e-82 308.5 289 60.9
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 6.0e-81 305.1 301 56.5
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.3e-80 303.1 216 71.3
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 1.5e-79 300.4 265 60.8
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 1.2e-76 290.8 217 68.2
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 5.8e-76 288.5 256 61.3
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 7.6e-76 288.1 222 66.7
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.2e-75 286.6 206 67.5
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 5.5e-74 282.0 200 72.5
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 2.1e-73 280.0 277 59.6
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 3.5e-73 279.3 288 55.6
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 7.9e-73 278.1 289 56.7
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 3.9e-72 275.8 249 57.8
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 6.7e-72 275.0 307 54.1
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 7.4e-71 271.6 203 67.0
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.5e-68 263.8 273 51.6
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 1.0e-67 261.2 301 48.2
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 1.7e-67 260.4 295 51.5
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.2e-67 260.0 284 51.1
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.2e-67 260.0 283 55.1
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 8.5e-67 258.1 253 56.1
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.8e-64 250.4 217 64.5
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.8e-64 250.4 219 65.3
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 3.7e-62 242.7 204 63.7
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 3.7e-62 242.7 220 64.5
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 6.3e-62 241.9 205 63.4
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 1.4e-61 240.7 206 64.1
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.2e-59 233.4 205 60.5
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 2.1e-57 226.9 358 41.6
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 2.7e-57 226.5 280 48.2
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 1.1e-55 221.1 294 46.3
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 3.3e-55 219.5 311 42.1
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 4.4e-55 219.2 221 52.5
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 5.7e-55 218.8 180 62.8
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 2.4e-53 213.4 317 44.5
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 2.9e-51 206.5 175 63.4
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 5.2e-48 195.7 332 40.7
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 1.7e-46 190.7 231 53.7
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 3.2e-42 176.4 239 50.6
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.4e-39 166.4 326 35.6
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 6.3e-38 162.2 139 63.3
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 1.2e-28 131.3 263 36.9
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 3.3e-26 123.2 85 65.9
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 8.0e-25 118.6 85 69.4
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 8.0e-25 118.6 104 61.5
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 3.7e-14 83.2 79 60.8
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 4.9e-14 82.8 100 50.0
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 6.4e-14 82.4 275 29.1
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 1.6e-12 77.8 56 67.9
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 1.6e-09 67.8 55 60.0


User provided reference genes

Program Settings