Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 2.9e-216 755.0 386 100.0
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 3.6e-211 738.0 386 97.9
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 9.0e-194 680.2 386 90.9
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 7.9e-190 667.2 386 90.2
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 7.6e-177 624.0 393 85.8
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 5.5e-167 591.3 387 81.4
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 5.1e-165 584.7 384 83.6
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 9.7e-156 553.9 388 77.3
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.8e-155 552.4 388 78.6
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 4.8e-147 525.0 387 73.9
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 1.2e-145 520.4 409 70.9
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 2.3e-141 506.1 348 79.9
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 7.5e-140 501.1 396 67.9
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 1.4e-125 453.8 387 64.9
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 1.6e-110 403.7 401 56.9
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 2.8e-110 402.9 403 55.3
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 5.2e-109 398.7 404 55.2
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 5.2e-109 398.7 404 55.2
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 2.0e-108 396.7 409 53.1
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 7.5e-108 394.8 403 54.6
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 7.5e-108 394.8 404 54.7
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 7.5e-108 394.8 398 56.3
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 3.7e-107 392.5 405 55.1
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 8.3e-107 391.3 401 55.4
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 1.4e-106 390.6 406 54.2
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 1.6e-105 387.1 407 54.3
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 2.7e-105 386.3 415 52.8
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 1.3e-104 384.0 415 52.5
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 2.3e-104 383.3 402 53.2
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 3.9e-104 382.5 411 54.0
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 3.9e-104 382.5 406 53.4
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 8.6e-104 381.3 396 55.1
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 1.9e-103 380.2 415 52.0
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 8.1e-102 374.8 414 51.7
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 1.4e-101 374.0 405 52.3
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 3.1e-101 372.9 406 51.0
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 6.8e-101 371.7 409 52.6
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 8.9e-101 371.3 405 52.8
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 8.9e-101 371.3 404 52.0
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.2e-100 370.9 406 52.0
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 3.4e-100 369.4 412 50.7
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 4.4e-100 369.0 409 51.6
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 5.8e-100 368.6 404 52.5
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 7.5e-100 368.2 404 53.5
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 1.3e-99 367.5 402 49.3
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 2.2e-99 366.7 391 53.7
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 6.4e-99 365.2 398 50.8
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 1.9e-98 363.6 408 51.0
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.4e-98 363.2 405 51.9
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 7.1e-98 361.7 390 50.8
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 4.6e-97 359.0 412 50.2
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 7.8e-97 358.2 402 52.7
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 1.0e-96 357.8 400 50.8
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 3.0e-96 356.3 402 49.8
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.1e-95 354.4 405 51.1
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 9.5e-95 351.3 411 50.9
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 1.2e-94 350.9 425 50.8
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 1.6e-94 350.5 405 51.1
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 2.8e-94 349.7 407 50.9
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 1.1e-93 347.8 439 48.3
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 1.4e-93 347.4 387 50.4
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 1.8e-93 347.1 400 50.0
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 2.4e-93 346.7 399 50.1
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 3.1e-93 346.3 396 50.8
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 6.8e-93 345.1 400 49.5
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 6.8e-93 345.1 407 48.9
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 8.9e-93 344.7 405 49.4
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.4e-92 342.8 428 47.2
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 4.4e-92 342.4 435 46.4
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 5.8e-92 342.0 435 47.4
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 7.6e-92 341.7 415 47.7
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 9.9e-92 341.3 399 50.6
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 9.9e-92 341.3 411 49.6
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 9.9e-92 341.3 443 45.8
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.2e-91 340.1 443 45.6
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 2.9e-91 339.7 352 55.7
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 4.9e-91 339.0 371 53.4
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 8.4e-91 338.2 403 48.6
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 1.9e-90 337.0 405 48.6
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 1.9e-90 337.0 395 50.9
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 3.5e-89 332.8 405 48.1
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 6.0e-89 332.0 407 47.7
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 6.0e-89 332.0 404 47.8
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 1.0e-88 331.3 426 47.2
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.7e-88 330.5 380 49.2
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 1.5e-87 327.4 409 48.7
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 4.3e-87 325.9 398 49.2
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.3e-87 325.9 445 44.7
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 7.3e-87 325.1 372 52.4
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 9.6e-87 324.7 384 49.5
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 2.8e-86 323.2 409 48.4
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 4.7e-86 322.4 320 56.6
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 8.1e-86 321.6 375 47.5
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 9.0e-85 318.2 392 47.2
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 7.6e-84 315.1 350 51.4
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.3e-83 314.3 358 51.1
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 3.8e-83 312.8 418 46.2
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 8.4e-83 311.6 385 48.6
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.4e-82 310.8 386 48.7
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 1.6e-78 297.4 497 38.4
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 4.0e-77 292.7 399 44.4
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 3.2e-74 283.1 409 41.6
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 5.1e-72 275.8 497 37.6
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 5.8e-68 262.3 438 38.4
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 5.5e-66 255.8 407 43.7
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 6.7e-64 248.8 385 44.7
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.3e-62 244.6 315 48.3
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 1.0e-59 235.0 389 40.9
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 1.5e-55 221.1 277 46.9
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 8.2e-54 215.3 226 54.0
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 1.4e-53 214.5 313 42.2
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 2.0e-52 210.7 244 49.6
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 5.9e-52 209.1 289 44.6
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 5.5e-50 202.6 353 41.4
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 3.0e-48 196.8 320 38.8
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 6.7e-48 195.7 318 40.9
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 2.2e-43 180.6 222 50.5
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 5.1e-40 169.5 331 36.0
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 4.1e-37 159.8 410 31.2
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.2e-30 137.5 334 32.6
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 1.4e-29 134.8 128 52.3
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.0e-28 131.0 164 49.4
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 1.5e-26 124.8 148 47.3
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 1.5e-26 124.8 148 47.3
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 9.7e-23 112.1 141 46.1
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.0e-20 104.4 120 46.7
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 1.0e-19 102.1 289 28.7
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 4.2e-18 96.7 145 46.2
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 1.2e-17 95.1 98 61.2
Sp4g28240 Schrenkiella parvula HOM05D005133 ORTHO05D006685 2.3e-16 90.9 52 80.8
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 8.8e-16 89.0 42 88.1
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.5e-15 88.2 144 41.7
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 3.5e-12 77.0 65 67.7
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 3.8e-11 73.6 126 42.1
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.6e-09 68.2 65 55.4
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.1e-09 67.8 104 38.5


User provided reference genes

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