Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 0.0e+00 1380.2 734 100.0
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 0.0e+00 1344.7 732 98.1
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 0.0e+00 1271.9 732 93.6
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 0.0e+00 1190.6 741 89.3
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 1.0e-307 1059.7 742 79.1
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 3.3e-298 1028.1 740 78.4
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 1.2e-284 983.0 738 75.5
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 4.0e-283 978.0 745 74.5
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 7.0e-280 967.2 743 74.0
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 5.9e-279 964.1 745 74.0
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 4.2e-269 931.4 573 90.2
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 5.7e-266 921.0 744 71.8
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 3.3e-253 878.6 749 67.7
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 1.5e-117 427.9 411 64.7
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 8.5e-68 262.7 777 31.9
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 2.2e-63 248.1 764 32.2
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 2.2e-63 248.1 755 31.7
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 2.0e-61 241.5 765 29.3
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 3.8e-60 237.3 775 31.6
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 5.5e-59 233.4 771 31.6
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 1.0e-57 229.2 760 32.1
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 8.2e-55 219.5 599 32.9
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 7.0e-54 216.5 764 30.9
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 1.6e-53 215.3 762 30.6
BcaB02g09549 Brassica carinata HOM05D000603 ORTHO05D006412 2.0e-53 214.9 305 51.8
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 5.9e-53 213.4 812 28.8
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 1.0e-52 212.6 833 28.8
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 6.5e-52 209.9 752 30.5
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.5e-51 208.8 816 29.4
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 1.5e-51 208.8 769 29.9
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.6e-50 205.3 810 29.5
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 1.6e-50 205.3 748 30.7
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 8.0e-50 203.0 759 28.6
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 5.2e-49 200.3 759 29.0
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 1.2e-48 199.1 763 30.3
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 2.0e-48 198.4 824 29.4
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 4.4e-48 197.2 776 29.3
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 7.5e-48 196.4 759 30.0
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 2.2e-47 194.9 788 28.9
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 6.3e-47 193.4 779 29.9
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 1.1e-46 192.6 814 29.9
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 1.8e-46 191.8 783 29.9
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.4e-46 191.4 758 29.7
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 3.1e-46 191.0 822 28.5
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 5.4e-46 190.3 771 29.4
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 7.0e-46 189.9 761 28.5
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.0e-45 188.3 759 28.5
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 2.7e-45 188.0 325 43.7
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 7.7e-45 186.4 778 30.8
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 3.8e-44 184.1 745 29.3
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 6.5e-44 183.3 758 28.5
A03p25810 Brassica napus HOM05D005434 ORTHO05D006412 1.1e-43 182.6 218 58.7
BraA03t11795Z Brassica rapa HOM05D005434 ORTHO05D006412 1.1e-43 182.6 218 58.7
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 4.2e-43 180.6 325 43.7
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 6.1e-42 176.8 708 29.7
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 1.4e-41 175.6 830 28.4
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.5e-40 172.2 830 28.3
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 1.4e-38 165.6 808 27.0
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 7.0e-38 163.3 686 29.9
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 1.2e-37 162.5 778 25.6
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 2.0e-37 161.8 185 61.1
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.0e-37 161.8 802 28.3
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 2.7e-37 161.4 757 26.7
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 5.9e-37 160.2 771 27.5
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 1.0e-36 159.5 911 26.1
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 3.8e-36 157.5 765 26.7
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 8.6e-36 156.4 821 27.3
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 1.1e-35 156.0 777 26.6
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 2.5e-35 154.8 762 28.1
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 2.5e-35 154.8 862 28.1
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 3.3e-35 154.5 765 26.5
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 7.3e-35 153.3 779 28.5
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 2.8e-34 151.4 795 27.0
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 8.0e-34 149.8 804 27.6
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 8.0e-34 149.8 761 27.1
BcaC02g11600 Brassica carinata HOM05D024878 ORTHO05D039720 1.4e-33 149.1 178 59.0
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 1.2e-32 146.0 856 26.4
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 3.4e-32 144.4 759 27.4
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 4.4e-32 144.1 820 25.9
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 1.3e-31 142.5 794 26.2
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 4.9e-31 140.6 781 27.3
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 8.3e-31 139.8 757 27.6
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 1.2e-29 136.0 857 26.1
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 1.0e-28 132.9 764 27.1
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 1.3e-28 132.5 592 30.6
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 2.3e-28 131.7 790 25.4
BcaB02g09103 Brassica carinata HOM05D005434 ORTHO05D006412 3.0e-28 131.3 194 44.8
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 3.0e-28 131.3 756 28.3
AL6G38770 Arabidopsis lyrata HOM05D024724 ORTHO05D038645 3.9e-28 131.0 371 36.7
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 7.3e-27 126.7 583 27.6
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 3.6e-26 124.4 773 27.3
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.4e-25 122.5 577 26.5
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 3.1e-25 121.3 902 26.1
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 8.9e-25 119.8 765 25.0
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 1.5e-24 119.0 768 25.7
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 3.4e-24 117.9 157 44.6
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 2.2e-23 115.2 116 50.9
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 6.4e-23 113.6 757 27.7
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.1e-22 112.8 752 26.6
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 5.4e-22 110.5 759 24.5
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 6.0e-21 107.1 655 26.9
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 5.0e-20 104.0 753 24.6
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.1e-19 102.8 99 54.5
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.5e-19 102.4 742 26.7
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 3.3e-19 101.3 612 28.3
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 9.5e-19 99.8 805 24.8
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 8.1e-18 96.7 102 47.1
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 2.6e-16 91.7 123 43.1
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 1.4e-14 85.9 84 50.0
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 3.2e-14 84.7 453 27.4
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 3.2e-14 84.7 773 24.6
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 1.2e-13 82.8 637 24.3
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.2e-13 82.8 117 38.5
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 2.7e-13 81.6 85 43.5
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 3.5e-13 81.3 253 32.0
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 7.8e-13 80.1 576 24.7
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 3.9e-12 77.8 611 26.8
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 5.6e-11 73.9 837 24.4
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 2.0e-08 65.5 485 26.0
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 7.6e-08 63.5 112 34.8
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 1.3e-07 62.8 821 22.5
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 8.4e-07 60.1 145 33.8
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 8.4e-07 60.1 557 24.2
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.4e-06 59.3 351 25.6
BcaC02g12612 Brassica carinata HOM05D000603 ORTHO05D018684 3.2e-06 58.2 113 42.5
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 5.4e-06 57.4 850 24.0


User provided reference genes

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