Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 3.5e-305 1050.8 539 100.0
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 2.8e-302 1041.2 539 99.3
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 2.0e-300 1035.0 539 98.5
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 2.0e-300 1035.0 539 98.5
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 5.9e-284 980.3 541 91.9
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 4.2e-282 974.2 541 91.5
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 5.5e-282 973.8 539 91.1
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 7.2e-282 973.4 539 90.5
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 3.8e-275 951.0 540 89.6
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 4.8e-270 934.1 539 88.1
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 2.9e-259 898.3 540 87.2
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.0e-255 885.6 539 82.0
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 6.1e-249 864.0 543 80.8
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 6.6e-219 764.2 549 71.2
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 1.9e-218 762.7 531 73.3
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 4.3e-218 761.5 545 71.7
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 3.6e-217 758.4 550 70.4
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 3.1e-216 755.4 545 70.6
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 9.9e-215 750.4 529 72.0
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 1.3e-214 750.0 540 70.6
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 2.9e-214 748.8 529 71.8
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 3.7e-214 748.4 547 70.6
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 3.7e-214 748.4 529 72.2
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 4.9e-214 748.0 544 71.0
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 8.3e-214 747.3 532 72.6
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 5.4e-213 744.6 547 70.7
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 7.1e-213 744.2 543 70.3
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 1.2e-212 743.4 544 69.5
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 1.6e-212 743.0 543 70.0
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 1.6e-212 743.0 539 70.5
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 2.7e-212 742.3 531 71.8
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 4.6e-212 741.5 529 71.3
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 4.6e-212 741.5 532 70.9
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 6.0e-212 741.1 531 71.2
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 6.0e-212 741.1 536 70.0
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 1.0e-211 740.3 541 70.2
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 1.3e-211 740.0 530 71.5
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.7e-211 739.6 532 70.9
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 1.7e-211 739.6 522 72.6
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 1.7e-211 739.6 529 70.7
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 3.0e-211 738.8 528 71.4
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.9e-211 738.4 544 69.1
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.9e-211 738.4 544 68.9
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 6.6e-211 737.6 529 70.5
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 1.1e-210 736.9 545 69.7
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 3.3e-210 735.3 530 71.1
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 7.3e-210 734.2 525 71.2
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 7.3e-210 734.2 532 71.1
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 9.5e-210 733.8 532 70.5
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.6e-209 733.0 550 69.1
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 1.6e-209 733.0 530 71.7
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 4.7e-209 731.5 522 71.3
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 1.1e-208 730.3 523 70.7
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.4e-208 729.9 531 70.6
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.8e-208 729.6 527 70.4
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.8e-208 729.6 544 69.3
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.4e-208 729.2 529 71.3
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 5.2e-208 728.0 534 68.9
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 6.8e-208 727.6 544 69.7
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 7.6e-207 724.2 531 69.1
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 1.7e-206 723.0 545 67.5
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.2e-206 722.6 528 70.6
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.9e-206 722.2 540 69.3
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.1e-205 720.3 545 67.0
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 1.9e-205 719.5 532 69.7
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 1.2e-204 716.8 588 64.6
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 1.6e-204 716.5 522 70.5
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 6.0e-204 714.5 527 69.4
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 7.8e-204 714.1 580 65.7
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 1.0e-203 713.8 531 69.7
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 2.3e-203 712.6 545 68.3
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 3.0e-203 712.2 527 69.4
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.1e-202 710.3 525 69.5
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.1e-202 710.3 528 67.6
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 1.2e-201 706.8 559 65.5
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 6.2e-201 704.5 521 68.9
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 3.1e-200 702.2 521 68.9
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 2.9e-198 695.7 525 65.7
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 8.4e-198 694.1 525 69.0
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 1.1e-197 693.7 513 71.0
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 5.4e-197 691.4 528 67.0
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 7.8e-196 687.6 541 66.0
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 3.0e-195 685.6 526 68.3
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 3.9e-195 685.3 563 64.3
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.5e-194 683.3 539 66.4
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 1.9e-194 682.9 558 64.5
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 3.3e-194 682.2 519 68.2
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.6e-191 672.5 487 70.6
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 4.5e-191 671.8 527 65.1
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 2.3e-187 659.4 474 70.7
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 3.3e-186 655.6 495 67.9
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.4e-181 640.2 488 68.2
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 6.2e-177 624.8 534 62.2
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 3.0e-171 605.9 550 60.0
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 5.7e-170 601.7 583 57.8
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 3.1e-168 595.9 521 61.4
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 9.7e-162 574.3 438 67.6
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 8.5e-158 561.2 409 70.2
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 8.5e-158 561.2 410 70.0
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 7.8e-119 431.8 559 46.9
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 8.0e-116 421.8 546 46.0
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 2.7e-111 406.8 354 62.7
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 2.5e-109 400.2 537 43.2
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 3.3e-109 399.8 534 42.1
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 3.6e-108 396.4 546 41.9
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.3e-102 377.1 282 69.5
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 2.5e-101 373.6 540 38.7
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 4.3e-101 372.9 552 41.5
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 7.3e-101 372.1 263 73.8
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.2e-100 371.3 274 68.2
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 1.5e-98 364.4 324 62.0
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 1.4e-96 357.8 294 62.6
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 5.1e-86 322.8 190 84.7
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 3.3e-85 320.1 426 43.9
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 9.9e-74 282.0 636 31.9
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 1.4e-64 251.5 226 61.1
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.3e-62 245.0 316 48.1
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.6e-52 211.5 162 67.3
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 6.3e-52 209.5 152 67.8
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.4e-51 208.4 286 45.1
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.5e-45 188.3 128 73.4
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 1.5e-45 188.3 706 28.2
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 7.4e-45 186.0 123 74.0
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.4e-40 171.8 115 70.4
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 2.2e-36 157.9 131 60.3
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.7e-28 131.7 94 62.8
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 8.2e-28 129.4 97 66.0
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 5.5e-24 116.7 185 38.4
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 9.4e-24 115.9 59 89.8
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 8.5e-17 92.8 89 56.2
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 4.7e-15 87.0 51 82.4
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.4e-14 85.5 90 56.7
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 1.5e-08 65.5 159 29.6
BcaC02g12599 Brassica carinata HOM05D005743 ORTHO05D007031 2.5e-08 64.7 38 84.2
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 4.2e-08 63.9 52 67.3
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 1.8e-06 58.5 191 30.4
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 8.9e-06 56.2 40 72.5
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 8.9e-06 56.2 114 33.3


User provided reference genes

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